Carya illinoinensis (pecan): 122305176
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Entry
122305176 CDS
T08745
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122305176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122305176
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122305176
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_12
TPR_1
TPR_19
TPR_MalT
TPR_8
Coatomer_E
ARM_TT21_N
ARM_TT21
HEAT_Nup120
HTH_Crp_2
Motif
Other DBs
NCBI-GeneID:
122305176
NCBI-ProteinID:
XP_042973455
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Position
3:51141727..51150632
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AA seq
864 aa
AA seq
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MDLRDSSSSVVAAAPNRDGSSGTDDDAVLSVAAALAKDAALHFQTGKFSECVEVLNQLLL
KKENDPKVLHNVAISEFFRDGCSDPKKLLESLNNVKKRIEELACASGEQVEAVSNLLNKV
TLGSKGSTMANQLSTANSSNIVYTDEFDTSVAILNIAVIWFHLHEYTKALSVLEPLYQNI
EPIDETTALHICLLLLDAGLACNDASKSADVLIYLERAFGVSCVSQGDNGNTTQQSGNFV
AKTSSVPSPATDASHSDLAASVNASENTLSRTLSDEALEYETMFSTLDIGGQNRVRPSGI
LSSNDLSRPTVDRSLTTVDLKLKLQLYKVRFLLLTRNLKQAKREVKHVMNIARGKDSSTA
LLLKSQIEYARGNHRKAIKLLVASSNLSASSNRTDVAISSIFNNNLGCIYYQLGKYHTSS
IFFSKALTNASSLRKERPLQLSTFSQDNSFLIIYNCGIQYLACGKPILAARCFQKASLVF
YNRPLLWLRLAECCLMALEKGLLKTSHAPSERSEVKVHVVGQAKWRQLVVEDGISRNRHA
DSVERDTFTLRSDGQPKLSMSLARQCLHNALHLLNSLEWNYSKSDLPSSSSLEDIESSEA
ALSKNSNHKNLNNIDSKAFTVTIGVGQANANGDAKEPKGGTSQELIQNSLSYYEDIQRRQ
NHLIKQAILANIAYVELELQNPTKALLTARSLLELTECSRIYIFLGHLYAAEALCLLNRP
KEAAEHLSNYMFGGSNFDSPFSEEDWKQWQVERTIDGEELNGGSVTTMNSLAEDPQGIVF
LKPEEARAALYANFAVVSATQGELEQAHQFATQALSILPNSREATLTLIYVDLKLGKSTE
ALAKLKQSSRVRFLPSGVTLNKSS
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atggacttgcgagattcctcgtcctcggtggttgccgctgctcccaatcgcgacgggtcc
tctggcaccgacgacgacgccgttttgtctgttgcggctgcgctcgccaaggacgccgcc
ttgcacttccagacgggaaagttctccgagtgcgtcgaggtcctgaaccagctcttgctc
aagaaggaaaacgatcctaaagttcttcacaatgttgcaatttctgaattctttcgggat
ggctgctcagatcctaagaagttgcttgaatcgcttaataatgtcaagaagagaattgag
gagcttgcctgtgcatctggagaacaggtggaggctgttagcaatcttttgaataaagtc
actttggggtctaaaggaagtacgatggcaaatcaactttccactgcaaatagttccaat
attgtttacacagatgaatttgacacttctgtggcaatcctaaacattgcggttatctgg
ttccatctccacgaatatacaaaggcattatcggttctagaacctttgtatcaaaatatt
gaaccaatagatgagacaacagctcttcatatctgcctcttgttgctagatgctggcctt
gcttgcaatgatgcttcaaagtctgctgatgtattaatttatttggaaagagcttttggt
gttagttgcgtaagtcaaggtgacaatggcaacacaacacaacagtctgggaacttcgtt
gcaaaaacttcctctgttccttcaccagctacagatgcttcccattcagatttagctgct
agtgtgaacgcctcagaaaatactttatcgaggaccttatcagatgaggcacttgaatat
gaaactatgttctcaacactggatattggtggacaaaatcgagtgaggccttctggtatt
ttgtcttcaaatgatctgtcaaggccaactgttgatcggtctttgaccacagttgatctg
aagcttaagttgcagctttataaagttcggtttctgcttctcactaggaacctcaagcaa
gcaaaacgtgaagttaagcatgttatgaacattgcacgtgggaaagattcatcgacggct
ctcctcctgaagtctcagattgaatatgcacgcggcaaccaccgtaaagccattaagctg
ttagtggcttcaagtaatctgtcggcttcaagtaatcggacagacgtggcaatttcaagc
attttcaacaacaatcttgggtgcatttattatcagcttgggaaataccacacatcatca
atatttttttcgaaggcactgactaacgcttcatcacttcggaaggaaaggccactacag
ctgtcaactttctcccaggataactcttttcttataatatataactgtggtatacagtac
ttggcctgtgggaaaccgattcttgctgctcgttgcttccagaaggccagtttggtgttc
tacaaccgacctctcttatggctccgacttgctgaatgctgtctgatggctttagagaag
gggctactaaaaactagtcatgctccatcagaaagatcagaggtcaaagtccatgttgtt
ggccaggcaaaatggaggcaacttgttgtcgaagatgggatatcaagaaacagacatgcg
gactctgttgaaagggatacttttactttgagaagtgatgggcaaccaaagctttcaatg
tcgcttgcccggcagtgtctgcacaatgctctgcacttgctgaactctttggagtggaac
tattcaaaatctgatttgccctctagttcctccttggaggacattgaatcaagtgaagcg
gctttgtccaagaactcaaaccacaagaacttaaacaacattgattcaaaagcatttact
gtaacaataggtgtaggtcaagctaatgcaaatggtgacgccaaagaaccaaagggagga
acaagtcaggagctcatacagaattctctctcctattatgaagatattcagagaagacaa
aatcatttgatcaagcaagctattcttgctaacatagcctatgtagagttggaactgcaa
aaccccacgaaggccctgttgaccgctaggtctctcttggaacttacagaatgttctaga
atttacatctttcttggtcatttgtatgcagcggaggccctctgcctgttaaatagacca
aaggaagctgctgagcatttgtcgaattatatgtttgggggaagtaattttgattcgcca
ttcagtgaagaggactggaagcaatggcaagtggagaggaccatcgatggcgaagagctg
aatggaggatcagtgactaccatgaattctttagctgaggacccacaaggtatcgtcttc
ctaaagccagaagaggcgcgtgcagcactttatgcaaattttgctgtggtgtctgccact
caaggcgaacttgagcaggcccatcaatttgcgacgcaagcactatccatattacccaac
agtcgggaagcgactctgactttgatttatgtggatctcaagctcggtaagtcaacagaa
gctcttgccaagttaaagcagagtagtcgcgtcaggttcctccccagtggcgtaacactg
aataaatcttcttga
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