Carya illinoinensis (pecan): 122305375
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Entry
122305375 CDS
T08745
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122305375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122305375
04121 Ubiquitin system [BR:
cill04121
]
122305375
03036 Chromosome and associated proteins [BR:
cill03036
]
122305375
03400 DNA repair and recombination proteins [BR:
cill03400
]
122305375
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
122305375
Ubiquitin system [BR:
cill04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
122305375
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
122305375
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
122305375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-HC5HC2H_2
zf-C3HC4_2
zf-RING_6
zf-RING_UBOX
zf-C3HC4_4
zf-RING_5
zf-RING_10
zf-C3HC4
PTCB-BRCT
zf-RING_2
zf-C3HC4_3
PHD_NSD
RTT107_BRCT_5
Prok-RING_4
zf-Nse
Motif
Other DBs
NCBI-GeneID:
122305375
NCBI-ProteinID:
XP_042973801
LinkDB
All DBs
Position
3:54409642..54416119
Genome browser
AA seq
735 aa
AA seq
DB search
MGDSIDNGGSRFLNPWFLHFQKLGLELKCPLCLNLLAKPMLLSCNHIFCNSCIPCSAQLN
SECPVCKALYFNKDLRPAPFMDNLVTIYRGLEATFCANLFQRVPSDSRRVLEQFQASLYT
GNGSQEPSDIVQRDKSGSGQLIFPLLANKQDQIPLNLNSSVENGFGLNEKFEKYSTPIEG
KGGREGVKFNDALGMNPPPLSSQREPESLEEQKVGEIEMNQVSQSLPDTPPSFGDTKGSD
DESFYWGSVHSLENPLINRASNKHSESRTRQLRHDSSASETEDGYSRDIKRQKKLTYGPS
GLRIERHGCIPPVSHSEILMIPNSELELESRVTPVAAQQPLVLDASHMSNSICAFCQSPA
ISKNTGPILHYANGKMVVGDEASRSNVIHVHRLCVDWAPQVYFVNDTVKNLKAEVARGLK
IKCGKCGRKGAALGCYAKSCRKSYHVPCAVEMSDCRWDHENFLMLCPAHTSIKFPNEKSR
SGKHVFKDNLVPNQRAPPQPILWVAPRDGAKEWVICGSALSTEEKVLVLKFASMCGATVT
KYWKPNVTHVIAATDAQGACTRTLKVLMAILNGRWILKIGWVKACMEAMHPVDEEPYEVD
LDNHGSCNGPKTGRLMGLDNAPKLFNGLKFYFVGDFVPGYMEDLQNLVTTAGGTVLKSKE
EVVAQSCDDQVVLSRILVVYNLDSPQGCKVGEEVDILWKRLTEAQDVAADLGCQVIGHTW
LLESIAACNLQPLVN
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgggggattctattgataatggcggcagtagatttctgaacccgtggtttcttcatttt
cagaaactgggtctcgagctcaaatgccctctctgcttaaacttgctggccaaaccaatg
ttactctcctgcaatcacattttctgcaattcctgcataccctgctcagcacagcttaac
tcagagtgccctgtctgtaaagctctctattttaacaaagacttaaggcctgcacctttc
atggataatcttgtaacgatatataggggtttggaggctactttctgtgccaatctgttt
cagcgtgtgccttcagattccaggagggttttggagcaattccaggcttccctttatact
ggtaatggtagtcaggaaccctctgacattgtccagagggataaatcaggcagcggacag
ttaatctttccattattggctaataagcaagatcaaattccattgaatttgaatagttct
gttgaaaatgggtttggcctgaatgaaaaatttgagaaatacagtactcccatagagggt
aaaggtggtagggaaggagtcaaatttaacgatgcattgggtatgaatccaccaccattg
agttcacaaagggagcctgagagccttgaagagcaaaaggttggggaaatagaaatgaat
caggtgtctcagtcattaccagatacccctccttcgtttggtgatactaagggctcagat
gatgaaagcttttattggggcagtgtgcatagtctagaaaaccctttgatcaatagagca
tccaataaacattctgaaagcaggactaggcagttgaggcatgacagttctgcctctgaa
accgaagatggttattcaagggatatcaagagacaaaagaaattaacctatggaccatca
gggttgaggattgaaagacatggttgtattccaccagtctcacattctgagattcttatg
attcctaattctgaattggaacttgaatctagggtgactcctgttgctgcacagcaacct
ttagttttggatgcctcacatatgagtaatagcatttgtgcattttgccagtcccctgca
atctccaagaacactggcccaattttgcattatgctaatgggaaaatggtagtaggagat
gaggcaagccgttcaaatgttatacatgtccacaggctgtgcgttgattgggcaccgcag
gtgtattttgttaatgacactgttaagaatctgaaggcagaagtggcaagaggtttaaag
atcaagtgtggcaaatgtggacgaaagggagccgccctgggctgctatgcgaaatcctgt
cggaaaagctatcatgttccctgtgcagtggaaatgtcagattgtcgctgggatcatgaa
aactttctcatgctctgtcctgctcatacttcaatcaagtttccaaatgagaaatcccga
tctggaaaacatgtttttaaggataatctggtgccaaatcagagagcccctccgcagccc
atactttgggtagctcctagggatggagctaaagaatgggttatatgtggatctgctcta
tctactgaagaaaaggttcttgtgctcaagtttgcaagcatgtgtggtgcaactgtcacc
aagtattggaaaccaaatgtcacacacgtgattgcggccactgacgcacagggtgcatgt
actaggacgcttaaagttctcatggccattttgaatgggagatggatccttaaaattggc
tgggtaaaggcttgtatggaagcaatgcaccccgtggatgaagagccttatgaagttgat
cttgacaaccatgggagttgcaatggccccaaaactggcaggcttatgggcttggataat
gcaccaaagctctttaatgggttgaagttctattttgttggtgattttgtgcctggatac
atggaagatctgcaaaacctggttacaactgcaggaggtactgttttgaaaagtaaagaa
gaagtggtggcacaaagctgtgatgatcaggtagttctgtcaaggatactagttgtttat
aacctcgattccccgcaaggatgcaaggtaggagaagaagtagatattctttggaagagg
ttgactgaggcacaggatgtggctgctgacctaggatgccaagtcattggtcacacttgg
cttttggaatcaattgctgcatgcaacttgcagcctcttgttaactga
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