Carya illinoinensis (pecan): 122305392
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Entry
122305392 CDS
T08745
Name
(RefSeq) pre-mRNA-processing factor 39-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122305392
Spliceosome [BR:
cill03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
122305392
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_16
NRDE-2
TPR_2
TPR_12
UTP6_C
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
122305392
NCBI-ProteinID:
XP_042973837
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All DBs
Position
3:54578594..54596758
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AA seq
840 aa
AA seq
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MGDHDTDMISETSAVMGYTSGSYTSTDYSDANSNVVPDTSAFPSKATGDFAAPAALADIN
STVPGGFDLGDGNIYSTDPNPILQEAHVSTSFEAKPAVGVANTSEKVTDLENAATELSQA
AGNISSVDVSVGETGTLTVENGNSSDNMARAADEQQFDGFVPAMSAEEDRLWNIVRANSL
DFNAWTSLIEETEKVAQENILKIRKVYDAFLAEFPLCYGYWKKYADHEAHLGSVDKVVEV
YERAVQGVTYSVDIWLHYCIFSISTYGDPDTIRRLFERGLAYVGTDYLSFTLWDKYIEYE
YMQQEWGRLAMIYTRILEYPNQQLDRYFTSFKELAGSRPLSEIMTAEEAATAAGGLSEDS
VQANEGEVHPDATEQSPKPVSAGLTEAEELQKYIAVREEMYKKAKEFDSKIIGFETAIRR
PYFHVRPLNVAELENWHSYLDFMEKEGDFNKVVKLYERCLVACANYPEYWIRYVLCMEAS
GMLDLANNALARATQVFVKRQPEIHLFAARFKEQNGDIPGSQDAYQLVHTEISPGLIEAI
IKHANMEYRLGNLEAAYSLYEQAIAIEKGKEHSQTLPMLYAQYSRFVYMVSGNEEKAREI
LVQALEHVQLSKPILEALIHFEVIQSLPKRIDYLDSLVVKFIVPDLESPNVASPADREEL
SCIFLEFVNAFGDVPSIKKAEDRHAKLFLPHRSTSELKKRHAEDYLASDKAKIARSYSVP
SPAQSLMGAYPNAQNQWTSGYGLQPQAWPPATQAQGQQWAPGYTQQQAAYSAYSGYGSSY
TNPQTAASTPQTPSFGAYPSTYPAQAFPQQSYAQPAAAATLAAPAQQPAAVPQAYYGSYY
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgggagaccatgatacagatatgatatctgagacatctgctgtgatgggctatacgtct
gggagttatacttccacagactattctgatgccaactcaaatgttgtccctgacaccagt
gctttcccatctaaggctactggggattttgctgcccctgctgctctggctgatataaat
tctaccgttcctggtggttttgatttgggagatgggaacatatatagtacagatcctaat
cccatcttgcaagaagcacatgtgagtacatcatttgaagccaagccagctgtcggagtt
gctaatactagtgagaaagtcaccgatctagaaaatgcagcaacagagttgtctcaagca
gctggtaatatttcttctgtggatgttagtgttggtgaaacgggtaccctcacagttgag
aatggaaattcttctgataatatggcgagagctgccgatgagcaacagtttgatggtttc
gtaccagctatgtctgcggaagaagatcgactttggaacattgtgagggctaattcttta
gattttaatgcatggacttccttgattgaagagaccgagaaggtggcacaggagaacatt
ttgaaaattcgaaaagtttatgacgcttttttggcagaatttcctttgtgttatggttat
tggaaaaagtatgcagaccatgaggctcatctaggctctgtagacaaagttgtggaggtt
tatgaacgggcagttcaaggagtgacatattcagtggacatttggttgcattattgcata
ttttccattagcacatatggggatccagacaccatcagaaggctttttgaacgaggatta
gcttatgttggaacggattacctgtcgttcaccctctgggataaatatattgaatatgaa
tacatgcagcaagaatggggccgtcttgctatgatttacacccggattttggagtatcca
aatcaacaattggatcggtattttaccagcttcaaagagttagctggaagtcgacctttg
tctgaaataatgactgcggaggaagctgcaacagcagctggtggactttcggaggatagt
gtccaagcgaatgagggagaggttcatcctgatgctacagaacaatctcctaaacctgta
agtgctggcttaacagaagcagaggagttgcagaagtatatcgccgttagagaagagatg
tataagaaagctaaagagttcgattctaagatcattggttttgaaacagctattaggagg
ccctactttcatgtccggcccctcaatgttgcagagcttgaaaattggcatagctatttg
gatttcatggaaaaggaaggtgactttaacaaggtggtcaagttatatgaaagatgcctg
gttgcatgtgccaattatcctgaatattggatacggtatgttttatgcatggaagctagt
ggaatgttggatcttgcaaataatgcacttgctcgtgcaacccaagtctttgtcaagaga
caaccagagattcacctttttgctgcacggtttaaagagcaaaatggggatatacctggt
tctcaagatgcctatcaactggtgcatactgaaatctctcctggtctcattgaagcaatt
attaaacatgcaaatatggaatatcgcctggggaatctagaagctgcctactccttgtat
gaacaggccattgctattgaaaaaggaaaagagcattcacagacattaccgatgctgtat
gcgcaatactctcgatttgtgtatatggtttctggtaatgaagaaaaagctagggaaatt
ctagttcaagcacttgagcatgtccaactatcaaaaccgattcttgaggctttaatacat
tttgaggtaattcagtccttaccgaagcgaatcgattatttggattcattggttgttaag
ttcattgttcctgacctggagagccccaatgttgctagtccagctgatcgggaagagcta
tcgtgcatttttttggagtttgtgaatgcctttggggatgtaccatccatcaagaaggct
gaggatcggcatgccaagcttttcttaccccaccggagcacctcagagttgaaaaagcgc
catgcagaggattatctagcatcagataaagctaagatagctaggtcttattctgttcct
tcacctgcccagtccttgatgggtgcatatccaaatgcacaaaaccagtggacatctggt
tatggtttgcagcctcaagcttggcctccagctacacaagcacagggacaacagtgggcc
cctggatatacgcaacagcaggctgcatacagtgcatatagtggttatggaagcagttac
actaatccacaaacggcagcatcaacgccacaaactccatctttcggggcttatcctagt
acatatcctgcacaggctttccctcaacaaagttacgcacaacccgctgcagcagcaact
ttggctgccccagcccagcagcctgcggcagttcctcaggcttattatgggagttactac
taa
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