Carya illinoinensis (pecan): 122305460
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Entry
122305460 CDS
T08745
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1 isoform X1
KO
K14411
RNA-binding protein Musashi
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122305460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122305460
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122305460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
122305460
NCBI-ProteinID:
XP_042973946
LinkDB
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Position
3:complement(55417646..55424095)
Genome browser
AA seq
491 aa
AA seq
DB search
MDSYDRYGGNDLRTMQSDSGKLFIGGISWDTNEERLKEYFSSYGEVVEAVIMKDRTTGRA
RGFGFVVFVDSAVADRVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGRTR
KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLVR
NFHELNGKMVEVKRAVPKELSPGPSRSPLGGYNHGLNRVNSFLTGYNQGYTPSTVGGYGL
RMDGRLSPVAGGRSGFPPFGSGYGMGINFEPGLSPGFGGSANFNSNLSYGRGLNPYFVGN
SNRFSSPIGYDGRNGGNSSFFSSVTRNLWGSGGLNYGTNSASSSAYQGSGRGSIAEGTFS
NAGVNWGSSGISTQGGNNVSNNSGNIGYGGGDNSYGLGTGGYGRNSGTNVAQTSSYTPSN
GGFDGAFADFYSGGSGYGDATWRSSNAERDGSGPFGYGLSSAASDVSAKTPPGYVGGYSV
NKRESNRGIAA
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggattcttatgaccgatatggcggcaatgatttgagaacaatgcaatctgatagtggt
aagttatttatcggtggaatatcttgggacacaaatgaagagcgtctcaaggagtatttt
agttcatatggggaggtggtagaagctgttattatgaaggatcggacaacaggtcgtgct
cgaggttttggctttgttgtttttgtggactcggctgttgcagacagggtcataaaggag
aagcataacattgatggaaggatggttgaggcaaaaaaggccgttcctagggatgaccaa
aacattttgagtagaaacagtggtagtatacatggctctcctggtcctggccgaactaga
aagatatttgttggaggtttggcatccacagtcactgagagtgacttcaagaagtacttt
gatcagtttgggacaatcacagatgttgtggtgatgtatgatcacaacacccagaggcct
agaggctttggattcattacttatgattcagaggaagcagtggacaaggttttggtcagg
aactttcatgaactaaacggtaaaatggtcgaggtcaagcgtgcagttcccaaagagtta
tccccaggtcccagtcgcagtccacttggtggatacaaccatggtctgaatagggtcaat
agcttccttactggctataatcaaggatatactccaagtactgttggaggctatggactt
cgaatggatggtagattaagtccagttgctggtggcagaagtggctttcctccatttggt
tctggttatggaatgggtataaattttgagccggggttgagcccaggatttggggggagt
gcaaattttaatagtaatctgagctacggacggggattaaacccttattttgttggtaac
tcgaataggtttagtagtccaattgggtatgacggtcgtaatgggggaaactcctccttt
ttcagctcagttactcgaaatctttgggggagtggagggcttaattatggtaccaactct
gcaagttccagtgcataccagggatcaggacgtgggagcattgcagaaggtacattttct
aatgccggagttaattggggatcttcaggaatttctactcaaggtggaaataatgtttct
aataatagtgggaacattggttatggaggtggtgataacagttatggtttgggaacagga
ggttacggaagaaacagtggtaccaatgtggcccaaacatcatcttatactccatcaaat
ggtggttttgatggggcctttgctgacttctatagtggtggttcaggatatggggacgct
acttggcgatcatcaaatgctgaacgagatggatctggtccctttggctatgggctcagt
agtgctgcttctgatgtctctgctaaaactcctcctggttatgttggtggttatagtgtt
aataagagagagtcaaatagaggaattgctgcatag
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