Carya illinoinensis (pecan): 122305524
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Entry
122305524 CDS
T08745
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein A1-like 2 isoform X1
KO
K14411
RNA-binding protein Musashi
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122305524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122305524
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122305524
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
122305524
NCBI-ProteinID:
XP_042974065
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All DBs
Position
1:2420952..2427530
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AA seq
359 aa
AA seq
DB search
MDRKLVVLGIPWDVDTEGLRDYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVEDAKNA
LSGEHFLGNRMLEVKVATPKEEMRAPAKKVTRIFVARIPQSVTEETFRSHFEQYGDITDL
YMPKDQGSKIHRGIGFITFASADSVDNLMAETHELGGSTVVVDRATPKEDDFRPMGRTAQ
GGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRGESSRGMGKKIFVGRLPQEASSEDLR
QYFGRFGRILDVYVPRDPKRTGHRGFGFVTFADDGVADRVSRRPHEICGHQVAIDSATPL
EDAGPSGSFMMNPAESFGGYGGPMRTYGRMYGSLDFDDWGYGLGSGGRPSRADWRYRPY
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atggaccgtaagcttgtggttctgggtattccttgggatgtggatacggaggggctgagg
gattatatgagcaaatttggggaattggaggattgcattgtcatgaaggagaggtcaact
ggccgatctcgtggctttggttatgtaacatttgcatcagttgaagatgctaagaacgca
ttgtcaggcgagcactttcttggaaaccgaatgctggaagttaaagtggccaccccgaag
gaggaaatgagagcacctgcaaagaaagttaccaggatatttgttgctagaatcccacaa
tctgtgacagaagaaacatttcgaagtcatttcgagcaatatggcgatataacagatttg
tacatgcccaaggatcaaggctcaaaaattcatcgtggaattgggtttatcacctttgca
agtgcagactctgtggacaatttgatggctgaaactcatgaattgggtggttctactgta
gttgttgatcgagcaacaccaaaggaagatgacttcaggccaatgggcagaacggcacag
ggtggatatggtgcatacaatgcttatatttctgcagcaactagatatgcagcccttggt
gctcctactttatatgatcatcccggctcagtttatgggaggggtgagtccagtcgagga
atgggcaagaagatttttgtcgggaggcttcctcaggaggcaagctctgaagatctccgc
cagtattttggtagatttggccgtatattagatgtctatgttccaagggaccctaagagg
actggccaccgaggttttggttttgtaacttttgctgatgatggtgtagcagatcgtgta
tctcgaagacctcatgagatttgcggacatcaggttgcgatagattcagccacacctctt
gaagatgctggtcccagtggaagttttatgatgaatcctgcggaatcctttggcggctat
ggtggtccaatgcgaacctatggcaggatgtatggaagcctggattttgatgattggggt
tatggactcggcagtggggggagaccatcaagagcagattggaggtacaggccatactaa
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