Carya illinoinensis (pecan): 122305610
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Entry
122305610 CDS
T08745
Name
(RefSeq) CCR4-NOT transcription complex subunit 9-like isoform X1
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122305610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122305610
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122305610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
Motif
Other DBs
NCBI-GeneID:
122305610
NCBI-ProteinID:
XP_042974133
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Position
3:complement(21590693..21596413)
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AA seq
314 aa
AA seq
DB search
MANLPESWFYSDPRPSSFGAGPSTSGANTDKNSDHDQEDPRDKIVHLILELNDYSTRERA
LYLLDKSRGIREDLPLLLWNSFGTIYSLLKEILDVYRLIYAENLTQRASNRVCSALALFQ
CVASHRDTRMPFIKAKIPSYLFPLLATTNKEIPYEHLRLTSLGVIGSLVKTGDAEAVTYL
LQSEIFIYCIHCMEVGDELSQTVATYIIHRIIINEDGLRYCCAFANRFYSVSRALGNMLE
RSAELPEKRLLKYIIHCYLRLSHNPRARDGLRTCLPASLRHPNIINHLHNDPTTVGFLQQ
LLYNVSMGHQYTVI
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacctgccagaatcttggttttactcagatccaagaccgtcatcgttcggagcg
ggtcctagcacgtccggagccaacactgacaaaaattctgatcatgatcaagaggaccca
agagacaaaatagtgcatttgattcttgaacttaacgattatagtactcgagagcgcgct
ctttacctcctagacaagagtaggggaattcgtgaagatttacctctcttgttatggaat
tctttcggtacgatatactcgctcttaaaggaaatactcgatgtataccgcttaatatat
gccgaaaacctaacacaaagagcatcgaatcgtgtatgcagtgctcttgctctatttcag
tgcgtggcttctcaccgagatacaaggatgccgtttatcaaggctaaaattccatcgtat
ctattccctctacttgccactacgaacaaggaaataccttatgaacatctaaggcttacc
agcttaggtgttatcggttccttagtgaagactggtgatgcagaagccgttacttacctt
ctacaaagtgaaatatttatttattgcattcactgcatggaggtgggcgatgaattgtca
caaacagttgccacatatattattcatagaattattataaacgaggatgggttgaggtat
tgctgtgcttttgcaaatcggttttattcagtgagccgtgctttggggaacatgttggaa
agaagtgctgagctacccgaaaaacggctgctaaaatatattatccattgttatctgagg
ctctcacacaatccaagggcacgtgatggtttgagaacttgccttcccgccagtttaaga
catcccaacatcatcaaccacctccataatgacccaacaaccgtcgggtttctgcaacaa
ttactttacaacgtctccatgggacaccaatatactgttatataa
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