Carya illinoinensis (pecan): 122306138
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Entry
122306138 CDS
T08745
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like isoform X1
KO
K14411
RNA-binding protein Musashi
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122306138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122306138
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122306138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
122306138
NCBI-ProteinID:
XP_042974485
LinkDB
All DBs
Position
4:complement(44367946..44374913)
Genome browser
AA seq
485 aa
AA seq
DB search
MEVFLACRKMQSDSGKLFIGGISWDTSEERLKEYFNSYGEVVEAVIMKDRTTGRARGFGF
VVFADSAVADRVIMEKHSIDGRMVEAKKAVPRDDQNILSRTSGSTHGSPGPGRTRKIFVG
GLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLVKSFHEL
NGKMVEVKRAVPKELSPGPSRSPLGGYNYGPSRANSFLSGYNQGYPPNTVEGYGLRMDGR
LSPVAGGRTALPPFGSGYGMGINFEPGLSPGFGGSSNFNSNLSYGRGLNPYYVGNSNRFS
SPIGYDSRNGGNSFFSSATRNLWGSGGLNFGTNPASSSAYQGPGRGSIAEGTFVNNGVNW
GSSEIFAQGGNSVSNNSGNLAYGGGDNSYGLGTGVYGRKSGNSVAQTSSYAASNGGFDGA
FADFYSGGSEYGDTTWRSSNAEQDGSGPFGYGFGSTVSNVSSKTPPGYVGGYSVNKRESN
RGISA
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggaagtatttttggcatgtagaaaaatgcaatctgatagtggtaagttatttattggt
ggaatatcttgggacacaagtgaagagcgtctcaaggagtattttaattcatatggggag
gtggtggaagctgttattatgaaggatcggacaacaggtcgtgctcgaggctttggcttc
gttgtttttgctgactcagctgttgcagacagggtcataatggagaagcacagcattgac
ggaaggatggttgaggcaaaaaaggctgttcctagggatgaccaaaacattttgagtaga
accagtggtagcacccatggttccccaggtcctggccgtacaagaaagatattcgttgga
ggtttagcatccaccgtcacggagagtgacttcaagaagtattttgatcagtttgggata
atcacagatgttgtggttatgtatgatcacaacacccagagacctagaggctttggattc
attacttatgattcagaggaagcagtggacaaggttttggtcaagagctttcatgaacta
aatggtaaaatggttgaggtcaagcgtgctgttcccaaagagttatcaccgggtccaagt
cgcagcccacttggtggatacaactatggtccgagtagggcaaatagcttccttagtggc
tacaatcaaggatatcctccaaataccgttgaaggctacggacttcgaatggatggtaga
ttaagtccagttgctggtggtcgaactgcccttcctccatttggttctggttatggaatg
ggtataaattttgagccagggttgagcccaggttttggggggagttcaaattttaatagt
aatctgagctatggacgtggtttgaacccttattatgtcggtaattcgaatagatttagc
agtccaattgggtatgacagtcgtaatggaggaaactcctttttcagctcagcaactcgg
aatctttgggggagtggggggcttaattttggcaccaaccctgcaagttccagtgcatac
cagggaccaggacgtgggagcattgcagaaggtacatttgtcaataatggagttaactgg
ggatcttcagaaatttttgcccaaggtggaaacagtgtttctaataatagtgggaatctt
gcttatggaggaggtgataacagttatggtttgggaacaggagtgtatggaagaaaaagt
ggtaacagtgtagcccaaacatcatcttatgctgcatctaatggtggttttgatggggcc
tttgctgacttctatagtggtggttcagaatatggagacaccacttggcgatcatcaaat
gctgaacaagatggatcgggtccctttggctatgggtttggtagtaccgtttccaacgtt
tcttctaaaactcctcctggttatgttggtggttatagtgttaataagagagagtcaaat
agaggaatttctgcatag
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