KEGG   Carya illinoinensis (pecan): 122306946
Entry
122306946         CDS       T08745                                 
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
cill  Carya illinoinensis (pecan)
Pathway
cill03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cill00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122306946
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cill03019]
    122306946
   03041 Spliceosome [BR:cill03041]
    122306946
Messenger RNA biogenesis [BR:cill03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     122306946
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     122306946
Spliceosome [BR:cill03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    122306946
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_PARP14_3 SF3a60_bindingd Nup35_RRM_2 RRM_Nup35 BRAP2
Other DBs
NCBI-GeneID: 122306946
NCBI-ProteinID: XP_042975462
LinkDB
Position
4:2449104..2451445
AA seq 374 aa
MDSHANEAVSDRETSDVKYSDLREEDDKSQPHTGDGASAGKIFIGGLARETTDAQFVKHF
GRYGDIIDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIDDTHIINGKQVEIKRTIPKGAI
GSKDFKTKKIFVGGIPTTMNEDEFRDFFTQYGEVKEHQIMRDHSTSRSRGFGFITFDTEQ
AVDDLLSRGNRLEMAGAQVEIKKAEPKKPNPPPAPSRRYNDSRSTFGGGFRDGYSGFGEG
SFSGGGGGGGGGYRSGGPYGGRGSAYGGYGGSEFGGYGGYGVGGGMASYREDSYLGYSGR
YGGGFSRGYDLGGGYGGPGDSYGGYGGGGGAAGGYGSSYDGSLGSGYGGGSGSFYGSRGG
YGGAGSGRYHPYAR
NT seq 1125 nt   +upstreamnt  +downstreamnt
atggactcgcacgccaatgaagccgtctctgacagagaaaccagtgacgtaaagtactct
gacctcagagaagaggacgacaagtcccaacctcacaccggcgacggtgccagcgctgga
aaaatatttatagggggtttagcacgagagacaactgatgcgcaatttgtcaagcatttt
ggtagatacggtgatattattgattctgtgataatgaaggatcgtaagacagggcaaccc
cgtggattcgggtttgtgacttatgcagacccctctgtggttgataaagtcattgacgac
actcatattattaatgggaaacaagtggaaattaagcgtactattccaaagggtgctatt
ggctctaaggatttcaagactaagaagatttttgtcggggggatccctacaaccatgaat
gaagatgagttcagggacttctttacacaatatggagaggtcaaggaacaccaaatcatg
cgggaccattccactagtcgttctcgtggatttggatttattaccttcgacacggagcaa
gctgttgacgatctattgtccaggggtaacagattggaaatggcaggagctcaggtggag
atcaagaaggcagagccaaagaagccaaacccaccacctgcaccatccaggcgttataat
gattcaaggtccacatttggtggtgggttcagggatggatatagtggatttggagaaggt
agctttagtggtggtggtggtggtggtggtggtggttataggtctggtgggccttatggt
ggcagggggagtgcttatggtgggtacggtggaagtgaatttggtggttatggaggatat
ggtgttggtggtggaatggcgtcttacagggaagattcgtaccttggatactcaggtcgt
tatggaggaggctttagtagaggttatgatctaggaggtggttatggtggacctggtgat
agttatgggggatatggtggtggtggtggtgctgctggtggctatgggagtagctatgat
ggcagccttggcagtggatatggaggtggtagtggctccttctatgggagcagagggggc
tatggtggtgcagggagtgggcgatatcatccttacgcaagatag

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