Carya illinoinensis (pecan): 122307096
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Entry
122307096 CDS
T08745
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1 isoform X1
KO
K28108
shortage in chiasmata 1
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cill03036
]
122307096
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Meiosis-specific proteins
Others
122307096
BRITE hierarchy
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Ortholog
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GFIT
Other DBs
NCBI-GeneID:
122307096
NCBI-ProteinID:
XP_042975653
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Position
4:complement(7077260..7096075)
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AA seq
1660 aa
AA seq
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MHLNVDYFSPSENLELPTFLRLPVPHLPPPTLSTLPDLIPFLSPLDYSLRIHHFPIDSAL
SKFSSAVLPQIIDDANLGDFDVNVPSWSGKACFDENWLVQQENGIFSTEREVDGQTTFGY
ETLESVLAKKANGIAVDDKDASRCDVIQFETPELDALLENVCFFEEEDVQILSGVPEIEN
CLEMLRQELRMQDPCEVQGLIYSVEDFTSKYTMEQKAYVLEDDRSVQDQICCRQSLFPSL
EVDETSLGTLTCLSIEEELLSLLENAEHLSWLQKDNMVNNVEELLGSRACDISQFLLAHC
LSKDCPDHELAAMENFPEMDFISMVEHSQIQGNPSCKGKSQLDCLLAVTPVIFQELQFLD
VDSSQLFGAVFNRQTAYEPEKCDWLFTEDMNFKNFNELIVSYELALVDNTFKSLPVPLFS
DDEKIRSLCSIIEDILAGLEQLPRSASDEIYLDWHLLEEDKCNSRIYSSYHSMLEDVDSP
TFDFDLGSFDDGKLVFEIVFSDNVLNRPKIEEKKESLNLLHHGISVSTAHDVGDISKKLL
DDECLNPGNGEQLAEKDAERAFLLFKSMSQFNDLDFFLNPRKASAGEYSDSAIKAVVADA
TFSEVPSSNSSTACASTGVQLHHCDVVSYGVKLSDIIVAIVDNFEKSYLSILQNEREMIK
TYIPFLAEENFKLLSLPKQKLMDCIKKINAQGTTSHRDENIKVFFTLCALKQMAWYVCFY
GIHPTHQYVDKLCHSLEFLRSRLGNLWPLIEDAGRKVEREITSSHPSLTFIQEILHSSTT
QGNLKVLIVAEEIFWWSLRSLLMSVGLSFSEFENYYAHANQSDLLKNDEDFINARMDALL
VADCLLVSHEHVSASFPFNKFGVILEYGGSCGSSRINCLSPKLVGFPRLHFLKVELDKSS
TSKALCEGVDMPRITEMATLTLPYMTMEESENMNIQKLEKLINFLPIEGKFTMGPLGAAD
EAEACCMPLPVPTVPFAMESENVSQIMVPSPERIIIVNTQNFDKQMIVSRRSTYQRILAM
ENEGAQVVERDSDLPVDVIISSAICLVWYDCRNIGKKAAALDEASSCLPLCIENVASNVL
TLLSFTFSGCFLVFEGEISFLSNIMESSDGLYAAAASLGIDLQIFCSYSSEMTDEIILSC
ISYATKLTKGLYPKMPESETLAESFLTKFPSINPLMAHAILSSGGVLIEFLEWTPECRTR
AIQKYNVSEESLTLFSALCKYGEREDSKSIMTDCSSVSSGPDSEKCHFNIGSGRRRKHSS
SPHKIDLHMDALVNFETLYKFPDDALDPSPLSKPNNMWMSKDPKILDEFRKPSTLPNGIF
GQKQGLDMDMLTNPSSFPNPWDSQFSKSPQMPNEIKKPYFSLSDIMPGHNQVSDTAMMNN
LDWHGMRKSENQSGDIIGEVIDLTDSPVSGQDFSSIGSSMKFSLSVPEMDNYLTRKSKTA
RKLSFGKSSHATCSVAAEVNSNSDIWSFKKVQRQNFPEVANDYQVLLEEGSTERTAADSM
GLAFQENKISSYGATPLSNALSSTHPQQNSPWTIEFLNRIREKSRLRQQSLPCDTSSPCL
GYSGNISKVSKRKSPSILEFFKYQGSSMPRPEQKRQKKSVESSNSSKNKKASSSVFPTRT
PSDKRARKTLSFAMNGSGSQSKLVWSDGTHGLSKKFRNQL
NT seq
4983 nt
NT seq
+upstream
nt +downstream
nt
atgcacctcaacgtcgactacttctctccgagcgaaaacctagaactcccgaccttcctc
cgcctcccagtccctcacctccctcctcccactctctccaccctccctgatctcatcccc
ttcctctcgcccctcgactactcacttcgaatccaccattttcccatcgactccgctctc
tctaagttctcctccgccgttcttcctcaaattattgacgatgccaatctcggagacttt
gacgtcaatgttccgtcttggagtggaaaagcttgcttcgacgagaattggcttgtgcag
caagagaacggtattttctccacagagagggaagtggatggccaaacaacttttggatat
gaaactctagagagtgtattggcaaaaaaggctaatggaattgctgttgatgataaggat
gcaagcagatgtgatgttatccaatttgaaacaccagagttggatgcattgttggaaaat
gtctgtttttttgaggaagaggatgtacaaattctgtctggagttccagaaattgaaaat
tgtctggaaatgcttaggcaagagttaagaatgcaggacccttgcgaagttcaaggactg
atttattcagttgaagattttacgtcaaaatacaccatggagcaaaaggcttatgtcttg
gaagatgatcgttctgttcaggatcaaatatgctgtcgtcaaagcctttttccttccctt
gaagttgatgagacaagtttaggaactttgacatgcttgtctatagaggaagaacttctt
tcacttcttgaaaatgctgaacacctaagttggcttcagaaagataacatggtcaacaat
gttgaggaacttttggggtctagggcatgtgatatatcacagtttcttctagctcattgt
ctatcaaaggattgccctgatcatgagttggcagccatggaaaatttccctgaaatggac
ttcataagcatggtggaacattcacagattcaaggaaacccctcatgtaaagggaaatcg
caacttgactgtttattggcagtgactcctgtaatttttcaggaacttcagtttcttgat
gtggactcatctcaactttttggggctgtctttaacagacagacggcatatgaaccagaa
aagtgtgactggttgttcacggaagacatgaacttcaaaaatttcaatgaattgattgtt
agttatgagctagctttggttgataacacattcaaatcattgcctgtacctcttttctct
gatgatgaaaagataaggtcactgtgctccattattgaggatatactagctggcttagaa
caactgcctcgatctgcatctgatgagatatacttggattggcatcttttggaggaagat
aaatgcaactctagaatttattcttcctatcatagtatgttggaggatgtagattcacca
acctttgattttgatttggggtcttttgatgatgggaagttagtatttgaaattgttttc
tcagataatgttttgaataggccaaagatagaagaaaagaaggaatcgttaaacttactt
catcatggcatatctgtgtcaactgctcatgatgtgggagatatttcaaaaaaattgctg
gatgatgaatgtctgaatcctggaaatggtgaacaattagccgaaaaggatgctgagaga
gcgtttttgttattcaagtctatgtcacaattcaatgatcttgattttttcttgaatcct
cggaaagctagcgctggggaatatagtgactctgctattaaggcagttgttgctgatgct
acattttctgaggttccatccagtaactcaagcacagcatgtgcatccactggagtacaa
ttgcatcattgtgatgttgtgtcatatggagttaagctgtctgatattattgtggccatc
gtagacaactttgaaaagagctatctatccatcttgcagaatgaaagagagatgataaag
acatatatcccatttctagctgaagaaaattttaaattgctcagccttccaaaacaaaaa
ttgatggactgcattaagaaaataaacgcacaaggaaccacctctcacagagatgaaaat
attaaggtattttttaccttatgtgcacttaaacagatggcttggtacgtgtgtttttat
ggaatccatccaactcaccaatacgtagacaagttatgccatagtttggaattcttgaga
tcgagactaggcaacctatggcccttgattgaagatgcaggcaggaaggttgagagagaa
ataactagctcacatccgtccctgacatttatccaggagattttgcattcaagcactacc
cagggtaatttgaaagtgttgattgtggctgaagaaattttctggtggtcattgaggagt
ttgttgatgtcagtgggattatcatttagtgagtttgaaaattattatgcacatgcaaat
caatcagatctacttaaaaatgatgaagacttcatcaatgctagaatggatgccttgctg
gttgcagattgcctattggtatcccatgagcatgtttctgcatcgtttcccttcaacaaa
ttcggcgtcatcttggaatatggtggttcgtgtggctcatctagaataaactgtctttcc
ccaaagttggtagggtttcctcgacttcacttcttgaaagtggaactggataaatctagt
acttccaaagcactctgtgaaggtgttgatatgccccggattacagagatggcaacgtta
actctgccctacatgacaatggaagagagcgagaatatgaacatccaaaagctagagaaa
ctgataaactttttgcccattgaaggcaagttcactatgggacccttgggagctgcagat
gaagcagaagcttgctgtatgcctctgccagttcctacagtgccatttgctatggaatca
gagaatgtttcacaaatcatggtaccttcccctgaaagaatcattattgtgaacacacaa
aactttgataagcaaatgatagtatctagaagaagtacctaccaaagaattcttgcaatg
gagaacgaaggagcacaagttgtggaacgagattcagatttgcctgtggatgttataatc
agttctgctatttgcctagtgtggtatgattgcagaaacattggaaagaaagcagctgca
ttagatgaggcttcttcttgcttacctttgtgcattgagaatgttgcatcaaatgtttta
acattgctgagttttactttcagtggctgctttctggtcttcgagggagaaatcagcttc
ctttccaacataatggaatcatcagatggactctatgctgcagcagcgagcctgggaatt
gatttacagatcttttgctcctattcatctgagatgactgatgaaattatattgagctgc
atcagttatgccactaagttgaccaagggcctatatcctaaaatgcctgagtcagaaact
cttgcagagtcgtttctcacaaaatttccttccattaatcctttgatggctcacgctata
ttgtcttcaggaggcgttctcattgaatttcttgaatggacacctgaatgcaggacccgt
gcaatccaaaaatataatgtttctgaagagagtctcacattgtttagtgctttgtgcaaa
tatggtgagcgggaggattctaaatcaataatgacagactgctcctcagtatcttctggc
cctgactcagaaaagtgtcattttaatattggttctggaagaagacgaaaacacagcagt
agccctcacaaaattgacttacatatggatgcattagtgaatttcgagacattatacaaa
ttccccgatgacgccttggatccttctccattgtccaagccaaataatatgtggatgtca
aaagatcctaagatattggatgagttcagaaaacctagtacacttccgaatgggattttt
ggtcaaaaacagggattggatatggatatgttgacaaatccctccagttttcccaatcca
tgggattctcagttctctaagagtccgcagatgccaaatgaaataaaaaagccctatttc
tctttgagtgatataatgcctggtcataatcaggtatcagatacagctatgatgaacaat
ttggattggcatggcatgaggaaatctgagaatcagagtggggacattattggtgaagtt
attgaccttactgatagtcccgtatcaggtcaggatttttcctctattggtagttccatg
aaattctcactttctgtgcctgagatggataattacttgacaagaaagtctaaaactgct
agaaaattgtcatttggtaaaagcagtcacgcaacttgctcagtggctgctgaggttaac
tcaaattcagatatctggagttttaagaaagttcagaggcaaaatttcccagaagtagcc
aatgattaccaagtgctcttagaagagggctcaacagagagaactgcagcagattcaatg
gggttagcattccaagagaacaagatatcatcttatggggcaacaccgctctcaaatgct
ctcagttcaactcatccgcaacagaattcaccctggacgatagaatttcttaacagaatc
agggaaaaaagcagattgcgtcagcagtcccttccatgtgacacatcttctccttgttta
gggtattcggggaatatatcaaaagtttctaagagaaaaagtccctctattcttgaattt
ttcaagtaccaaggaagcagcatgcctagacctgaacaaaagaggcagaagaaatctgtt
gagtcatcaaactcatccaaaaataaaaaagcttcatcatctgtttttcccacacggacc
ccttctgacaagagagcacgaaagacgctatcttttgcaatgaatggaagtggaagccaa
agtaagctggtctggagtgatggaactcatggtctgagtaaaaagtttcggaatcaacta
taa
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