Carya illinoinensis (pecan): 122307272
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Entry
122307272 CDS
T08745
Name
(RefSeq) THO complex subunit 4D-like isoform X1
KO
K12881
THO complex subunit 4
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03013
Nucleocytoplasmic transport
cill03015
mRNA surveillance pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122307272
09122 Translation
03013 Nucleocytoplasmic transport
122307272
03015 mRNA surveillance pathway
122307272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122307272
03041 Spliceosome [BR:
cill03041
]
122307272
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122307272
TREX complex
122307272
Spliceosome [BR:
cill03041
]
Complex C
Other components
EJC/TREX
122307272
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122307272
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_11
Motif
Other DBs
NCBI-GeneID:
122307272
NCBI-ProteinID:
XP_042975972
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All DBs
Position
4
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AA seq
291 aa
AA seq
DB search
MATALDLSLDDLIKNRGSRERGRGRGRARRGRGPGRAYNGGRMPGAVRRGPLAVNARPSS
YTIAKSIRRPRTFPWQHDLFEESLRAAGIPGIGIGTKLYVSNLDYGVTNEDIRELFCEIG
DLKRYAVHYDKSGRPNGSAEVVYTRRSDAVAALKRYNNVLLDGKPMRIEIVGANAEMPVS
ARVNVTGVNGRRRRTVVMTPGAGPIGGSAAVKRGSGRNRFGGTSSRGRGSGSARAQVQDL
GRGRGGSRGWGRGRGRVRGRGRGSENNQPVDMSVDELNEDLENYHAVAKHT
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggctactgctttggatctgtccctcgatgatcttataaagaatagaggatcccgtgag
agaggtagaggaagaggtagggcccgccgtggccgtggaccgggcagggcatataatggt
ggaagaatgcctggggcagttcgaagaggtccccttgcagtgaatgctcggccatcatct
tatacaattgccaagtctatccgcagacccaggactttcccatggcagcatgatttgttt
gaagagagccttagagctgcagggataccagggataggaattggcacaaaattatatgtt
tctaacttggattatggagtgactaatgaagatataagggaacttttctgcgaaattgga
gacctgaaacgatatgcagttcattatgacaaaagtgggcgcccaaatggctcagctgaa
gttgtgtataccagaagaagtgatgcagttgctgctcttaagcggtataataatgttctc
ttggatggtaaacccatgagaattgaaattgtaggtgccaatgcagaaatgcctgtttca
gctcgtgtgaatgtcactggagtaaacggaaggaggagaaggaccgttgttatgacgcct
ggagctggtccaattggaggctctgctgctgtcaagcgtggctctggtcgtaatcgtttt
gggggtacaagtagccgtggccgtggcagtggcagtgcccgtgctcaggtacaggatctg
ggtcgaggtcggggtgggagccggggctggggccgtggccgaggccgagtccggggacgc
ggtcgtggatctgaaaataatcaacctgttgatatgtctgttgatgaacttaacgaagac
ctggagaactatcatgctgtagccaaacatacttga
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