Carya illinoinensis (pecan): 122307367
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Entry
122307367 CDS
T08745
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122307367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122307367
03036 Chromosome and associated proteins [BR:
cill03036
]
122307367
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122307367
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122307367
PBAF complex
122307367
GBAF(ncBAF) complex
122307367
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIB
SWIFT
Motif
Other DBs
NCBI-GeneID:
122307367
NCBI-ProteinID:
XP_042976161
LinkDB
All DBs
Position
4:3080373..3083155
Genome browser
AA seq
545 aa
AA seq
DB search
MSVNSNNPPKSLGASSSPFGNAGMPTNPQFSQSQAQIAAGFQSQFQLSQAQAIAQAQSKA
AAHAQAQAAHAQAQAQAAHAQFQAQLQAQGLSLNQTHPAGIGNLGTSSPSMSTPGNLGAK
RMPPKTPIRPLGVSPTNAVSPLKAMELQSAARRKKQKLPEKQLQDKVAAILPESALYTQL
LEFEARVDAALSRKKVDIQEALKSSPCVQKTLRIYVFNTSANQIRTIPKKPNAEPPTWTL
KIVGRILEDGVDPDQPGVVQKSNPFYPKFSAFFKRVTISLDQRLYPDNHVIMWENARSPA
PHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPALMEVLGIEVDTRPRIIAAIWHYVKA
RKLQNPGDPSIFNCDPPLQRVFGEERMKFTMVSQKISQHLFPPQPIHLEHKIKLSGNSPA
GTACYDVLVDVPFPIQRDLSALLANTEKNKEIDTCDEAICTAIRKIHEHRRRRAFFLGFS
QSPVEFIDALIESQSVDLKVAAGEANRSAEKERRSDFFTQPWVEDAVIRYLNRKPVAGSD
APGSM
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgtctgttaacagcaataacccgcccaagagcctcggggcctcttcttcgccctttggc
aatgccggtatgcccacaaaccctcagttttcacaatctcaagcccagattgcggctggc
tttcagagtcagtttcagttgtcccaagcacaggctatagcacaggcacagtccaaagct
gcggctcatgcccaagctcaagcagctcacgcccaagcacaagcacaagcggctcacgcg
caattccaggctcagttacaagctcaagggctttccctcaaccagacccatccagcaggc
attggtaatttgggtacatcgtcaccctccatgtcaacacccggtaatttaggcgcaaag
cgaatgccaccaaagacgccgatccgccctctcggtgtttcccctaccaacgcggtatcc
cccttgaaagcaatggaattgcaatctgctgctcggagaaagaagcagaaacttcccgag
aagcagcttcaagacaaagtggcagcgattctgcctgagtctgctctgtacacccagctt
cttgagtttgaggctcgtgtcgatgctgctctttcaagaaagaaagttgacatccaagag
gcccttaaaagttctccatgtgtgcaaaaaacccttcgcatttatgttttcaacacctct
gcaaatcagattcgcaccattccaaagaagccaaatgccgagccccctacctggacgctt
aagatagttggaaggatcttggaagatggggtggatcctgatcagcccggagtggtccaa
aagtcaaaccccttttacccaaagttctcagctttcttcaagagagtgaccatttccttg
gaccagagactatatcctgacaaccatgtcattatgtgggagaatgctcgatcacctgca
cctcacgaggggtttgaggttaagaggaaaggggataaagaatttactgtgaatatacgg
ttagaaatgaactacgtgcccgagaagttcaagctttcaccagctttgatggaagttctc
ggtattgaagttgatactcgcccgagaataatagctgcaatctggcattatgtaaaggcg
aggaaattgcagaaccccggtgatccctctatctttaattgcgatccacctcttcaaaga
gtttttggggaagaaagaatgaaattcacgatggtttctcagaagatatcacagcatcta
ttccctccacagcctatacatttggagcataagatcaagctttcagggaatagtcctgct
ggaactgcatgttatgatgtattagtcgatgtgccttttccaattcagagggatttatct
gctctattggccaacacagagaagaacaaagaaattgacacctgtgatgaagcaatatgt
actgctataagaaaaattcatgagcaccgtcggaggcgggcattcttccttggtttcagt
caatcaccggtggaattcatcgatgctttaattgaatctcaaagcgtggatttgaaggtt
gcagctggcgaagcaaatcgtagtgctgaaaaagagcgacggtcagatttctttacccaa
ccatgggttgaagatgctgttatccgctatttgaatcgcaagccagttgcagggagtgat
gctcctggaagcatgtga
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