Carya illinoinensis (pecan): 122307525
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Entry
122307525 CDS
T08745
Name
(RefSeq) DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03440
Homologous recombination
cill03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122307525
03460 Fanconi anemia pathway
122307525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cill03032
]
122307525
03400 DNA repair and recombination proteins [BR:
cill03400
]
122307525
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
122307525
DNA replication proteins [BR:
cill03032
]
Eukaryotic type
DNA Topoisomerases
122307525
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
122307525
FA (Fanconi anemia) pathway
122307525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_GRF
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
122307525
NCBI-ProteinID:
XP_042976379
LinkDB
All DBs
Position
4:8765677..8792595
Genome browser
AA seq
920 aa
AA seq
DB search
MAGGRTINVLNVAEKPSVAKSVAGILSRNQGLRTRDGRSRYNRIFEFNYSINGRPCHMLF
TSVTGHLMELEFEERYRKWHSCDPADLYQAPVRKFVPEDKLDIRRTLEEEARRCQWLVLW
LDCDREGENIAFEVVEVCTAVNPHLTIRRAHFSALIDREIHEAVQHLVEPNKWFADAVDA
RQEIDLRIGASFTRFQTILLKDAFIIDSATDDRNLVLSYGPCQFPTLGFIVERYWENQAH
EPEEFWTINCSHKSDEGIATFNWMRGHLFDYTCAVIIYEMCVQEPIATVTKVRQQEKLKY
PPYPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDSFSQRTDLHAIVQE
QQRHPIWGSYAQQLLDPGAGLWRNPGNGGHDDKAHPPIHPTKFFSGENGLSQDHHRLYEL
VVRHFLACVSQPAVGAETNVEIDISGELFSASGRVILSKNYLDVYRFESWGSSLIPTYVS
GQQFTPTSLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDSN
TRFSPTNLGEALVMGYDDMGYKLWKPYLRAVMERDMKAVSEGTKSKAEVLLTSLQQMKAC
FLDARLNKVKLFEAMGIFFERSNRSGGDEQHAHGEVVRQCGLCQESDMVLRRNRDGNFMV
GCLAFPQCRNAIWLPGSVSEAVVTTDICNTCTPGPVHLIQFKFRQLEIPPNYNANHLGCI
GGCDEILSQLIEICGTGSRVPARGRGSTASSSGVQQSNSRPGEARRSACIYCQQTVHSSS
DCPSHVSGSRSAQYRGMNPQTGDSSIPCSTCGTPCTLRTANTVTNRGRKFYSCPSQNCNF
FVWEDNLNNGTGGRSVRSAGMNISASNSRRSSSRGRGGRGGAHAASTTFVSATGDPISGR
RCFVCGDPSHFANACPNRGS
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atggccggcgggcgcaccatcaacgtgttgaatgtggcagaaaagccgtcggtggccaag
tctgtggccggcattctttcgaggaaccagggactgagaacgagggacggccgctcgcgt
tacaacaggattttcgagtttaattactccattaacggacgcccctgccacatgcttttc
acctccgtcaccggccaccttatggagctcgagttcgaagaacgctatcgcaagtggcac
tcctgcgaccccgccgatctctaccaagctcccgtccgcaaattcgtacccgaggacaag
ttggatatccggaggacattggaagaggaagctaggaggtgccagtggcttgtattgtgg
ctagattgcgatcgggaaggagaaaacattgcatttgaagttgtagaagtttgcacagca
gtaaatcctcatcttaccattaggagggctcacttctcagccttaattgacagggaaatc
catgaagcagtgcaacatcttgttgagccaaataaatggtttgctgatgcagtggatgct
cggcaagaaatagatcttcggattggtgcttctttcactaggtttcagactatactgttg
aaagatgcatttattattgattctgctacagatgacagaaatcttgttttaagttatggt
ccttgtcagttccctacacttggctttattgttgaaagatattgggaaaatcaagcacat
gagccagaagaattttggacaatcaactgttcacataaatctgatgaaggcattgctact
ttcaattggatgcgtggacatctgtttgattatacttgtgcggttataatttatgagatg
tgtgttcaggagccaattgcaactgttacgaaggttaggcagcaggagaagctaaagtat
cctccatatcctttgaataccatagagcttgaaaaacgtgcttcacgatacttccggatg
agttctgaacacaccatgaaggttgcggaagatttataccaagctggattcatcagttat
cctcgtacagagactgattccttttcacagagaactgatttgcatgcaattgtgcaagag
caacaaaggcatcccatatggggatcatatgcccaacagttgttggatcctggagcagga
ctttggaggaaccctggtaatggtggacatgatgacaaggcccatccacccattcatcca
acaaaattcttctctggggaaaatggattgagtcaagaccaccatagattatatgagctg
gtcgttcgccatttcctggcttgtgtctctcagccagcagtaggggctgaaactaatgtt
gaaatcgatatttctggtgaattgttttctgcatcagggagagtaatactatctaaaaac
tacttagatgtttaccgctttgagtcttggggaagttcattgatcccaacatatgtctct
ggacaacagtttacgccaacatcgttgactctcgattcaggagttactagaccaccacca
cttttgagtgaagctgatttgctaagctgcatggacaaggagggaattggtaccgatgcc
acaatgcatgatcacataaaaaagctgcttgatcggttttatgcaactaaggactcgaac
actcgtttctcaccaactaatcttggcgaggcactggttatgggatatgatgacatgggg
tataagctttggaagccatatcttagggcagttatggagcgtgacatgaaagcagttagt
gagggcactaagagcaaagctgaagttttgttaactagcttgcagcagatgaaagcttgc
ttcttagatgctagattaaacaaagtaaaactttttgaagctatgggaattttctttgaa
aggtccaatcgatctggtggagatgagcagcatgcacatggagaagttgtcaggcaatgt
ggactttgccaggaatcagatatggtccttcggcgtaaccgggatggcaatttcatggtc
ggatgcctggcttttccacagtgcagaaatgccatttggctccctggatctgtatcagaa
gcagtggtaaccactgatatttgcaacacttgcactccaggtcctgttcacttgattcaa
tttaagttccgccagctggaaataccaccaaactacaatgccaaccatttagggtgtatc
ggtggctgtgatgagattctcagtcagctcatagaaatctgtggaactggttctcgggta
ccagcacgaggacgaggatccactgcatcgtccagcggtgtccaacaaagtaactctagg
cctggtgaggctaggcgcagcgcttgcatatactgccagcaaacagtgcattcttcaagt
gattgcccatcacatgtttcaggttcccgaagtgctcagtatcgtggaatgaacccacaa
actggagactcttcaattccttgtagcacatgtggaacaccttgcactttgcgaacagct
aatacagtaaccaacagggggagaaaattctactcatgtccgtcgcagaattgcaacttt
tttgtgtgggaagataacctaaacaacggcactggaggaaggagtgttcgaagtgctggg
atgaatatctcagcatctaattcccgtaggagtagcagccgtggcagaggtggccgtggg
ggagcacacgctgcttccacaacttttgtgtcagcaactggtgatcctatttctggcaga
agatgttttgtttgtggtgatccatcacattttgcaaatgcctgcccaaatcgtggttct
tga
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