Carya illinoinensis (pecan): 122307780
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Entry
122307780 CDS
T08745
Name
(RefSeq) zinc finger CCCH domain-containing protein 41-like
KO
K13192
RNA-binding protein 26
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cill01009
]
122307780
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122307780
03041 Spliceosome [BR:
cill03041
]
122307780
Protein phosphatases and associated proteins [BR:
cill01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122307780
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
122307780
Spliceosome [BR:
cill03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
122307780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_Nup35
zf_CCCH_4
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
122307780
NCBI-ProteinID:
XP_042976803
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All DBs
Position
4:2364183..2373882
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AA seq
928 aa
AA seq
DB search
MELKVSSPKLASLSPSDCVGDPEEKEVSDDDDDDRNHKHRRRETRSQSLERDALEHVMTR
PYRKYNKHFEYGHPFRENESPQNQKDLSSKFERRRPGLMARTSLDSNHRFRGNQMFSGAG
PGRGRGRDSGSWNQRDSRFSSVDIASQLVHQGPIPPSLYNGMGLANVSNAQSASWNAFGL
ITGLPTGSLETLHSIGLQGTLRPPINPSMNIGIPHQRCRDFEERGFCLRGDMCPMEHGVN
RIVIEDVQGLSQFNLPVSLPSVHLLGTPAGTGPLPSVSASSTTLTNSKGFHSKSSKPGLV
EDGLGFNGAFSGSGCVGGADLYDPDQPLWNNNCTETSNGQHTLQSPNNKETDSVLNDDPS
DRHNGRSCDSADNECLHKSPGIAVASQGTGLSVWGRIGSSNNRLDVKAKIDSMMSSSDYF
ENEANEDKGALASVQNTSHQGKHIIAEVMDSKAMALSPKTPSDGTRNMRKPSQKALRTLF
VNGIPQKNNKRVALLSHFQKFGEIVDIYIPANSERAFVQFSTREAAEAALQAPDAVMGNR
FIKLWWANRDSIPDYGLSSGSSVSVTPRGATAASVPSYPSLASKGKDINQSAASKSSVLH
GSDASISVSDHPKPVISDGPKVPPLQKKLVSLEQLKEELRKKQELLDWKRNDFRRQLQKL
EKQATGLKGEVDSEQAAKRPKVEIVADIAKAATPRSTADPGSVLASPRAEIVGDQNKSVD
NVVSNSPKTSSIAVLQEPMSLKQPIRPVGPVGTPFLTNRYKLDNRPTAFRILPPLPAGLA
SDAVLKEHFSSYGDISNLELEDQQAGESEASKNCSARITFTTRRSAERAFGDGKCWQGHT
LEFMWLTSSDSAGGRENSPSIHKGHSDGQTPEKIEGITPEEGSASENGEPENSVRESGVE
RGELGDDDSQPSASTKSSERASHEGHVR
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggagctgaaagtctcatctccaaagctagcaagtctttctccgtctgattgtgttggt
gatcctgaggagaaggaagtcagtgatgatgatgatgatgatcgaaaccacaagcatcgt
aggcgggagacccgctctcaatctttggaaagagatgctctggaacatgtgatgacaagg
ccatatagaaaatacaacaaacatttcgaatacgggcatcctttcagggaaaatgaatct
ccacaaaatcagaaagatctatcttcaaagtttgaaagaagacgcccaggcttaatggca
cgcacatctttggattcaaatcatagatttcggggaaaccaaatgttttctggagctggt
cctggtaggggacgaggcagggactctggctcttggaaccaacgtgattcgaggttcagt
tcggttgatattgcttctcaattggttcaccaagggcccattcctccaagcctgtataat
ggaatggggttggcaaatgtttcaaatgcacagagtgcatcctggaatgcatttggatta
attacaggactaccaactggtagtctggaaacgctccattccattggtttgcaaggaact
ctcagaccacccatcaatccttcaatgaatattggcattcctcaccaacgctgcagagac
tttgaggagcgtggattttgtctgagaggggacatgtgccccatggagcatggtgttaat
aggattgtcattgaagatgttcagggtctttcacagtttaaccttcctgtttcacttcca
agtgtgcacctactgggaacacccgctggaactggacctttaccatcagtaagtgcttct
tcaaccactttgacgaatagcaaaggattccatagcaaaagtagcaagcctggattggtc
gaggatggtttggggtttaatggtgcattttctggttctggttgtgtgggtggagctgat
ttgtatgatcctgatcaacccctgtggaacaacaattgcaccgaaacatcaaatgggcag
catactctacaatcaccaaacaataaggaaactgattccgtgttgaatgatgatccctct
gataggcacaatggcaggtcatgtgacagtgctgataatgagtgtcttcataaaagccct
ggaattgctgttgcctcacagggtaccggtttgtctgtttggggtagaatcggtagttca
aataacagattagatgtaaaggcaaaaattgactccatgatgagttcctctgattatttc
gagaatgaagctaatgaagataaaggggccttggccagtgttcaaaacacttcccaccaa
ggaaaacatatcattgcagaggttatggactcaaaagctatggcattatctccaaagaca
ccgagtgatggtacacgtaacatgcggaagccttctcaaaaggcactacgtactctattt
gtcaatggcattccccagaaaaacaataaaagggtagctcttctttctcattttcaaaaa
tttggagaaattgttgatatttatattccagcaaatagtgaaagagcttttgtccaattc
tcaactagagaagcggcagaagctgctcttcaggcacctgatgctgtaatgggtaaccgc
tttatcaagctgtggtgggctaatcgtgatagcattcctgattatggcttaagcagtggc
agtagtgtctctgtaactccacgtggtgcaacagctgcttcagttccatcttatccttcc
ctggctagcaaagggaaagatattaatcaatctgctgcttcaaagagtagtgttctccat
ggttctgacgcctctatatctgtctctgatcatcctaagcctgtcatctcagatggtcct
aaggttccacctttgcaaaagaagctagtgagtttagagcagttaaaagaggagctccgc
aagaaacaagaattgctggactggaagcggaatgactttcgacgccagttacaaaaactt
gagaaacaagctacaggactaaagggcgaggtagattccgaacaagctgccaagagacct
aaagtggaaatagtggctgatattgctaaagctgctactccaaggtccacagctgatcct
ggttctgtgttggcatctccacgtgctgagatagtgggggatcagaacaaatcagttgac
aacgttgtgtccaatagtcccaaaacaagttcaatcgcggtgctgcaggaacctatgagt
ttaaagcagccaattcgtccagttggaccagtagggactccttttctaacaaacagatat
aaattggacaaccgtcctactgcatttagaattcttccacctttgccagccgggcttgca
agtgatgctgttttgaaggaacacttctcatcatatggcgatatttctaatttggagcta
gaagatcagcaagctggtgagtctgaggcatcaaaaaattgctcggctcgtataactttc
accacacgccgatcagcggagagagcatttggtgatggtaaatgctggcaaggccacact
ttagaattcatgtggttgacgtctagtgattctgctgggggcagagaaaattctccctcc
attcataaggggcattcagatggtcaaactccggaaaaaatagaaggtatcactcctgag
gaaggttctgcatcagaaaatggagagcctgaaaattcggttagagaaagcggtgttgag
cgaggggaactgggtgacgatgattcccagcctagtgcaagcacaaagtccagtgagaga
gcgtcacacgaaggccatgtccgttaa
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