Carya illinoinensis (pecan): 122307937
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Entry
122307937 CDS
T08745
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 7-like
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cill03009
]
122307937
03036 Chromosome and associated proteins [BR:
cill03036
]
122307937
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122307937
Ribosome biogenesis [BR:
cill03009
]
Eukaryotic type
Pre-60S particles
Helicases
122307937
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
122307937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
FlpD
CMS1
Motif
Other DBs
NCBI-GeneID:
122307937
NCBI-ProteinID:
XP_042977004
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All DBs
Position
4:6312989..6318337
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AA seq
696 aa
AA seq
DB search
MPSLALADPLLSDTPKYKKEKKNKKMKSMETVNATLEADSPITNKKTKKKRKALEIEEAE
EGSETSSELFDPVNWKAEDSEKNKKNKKLKKGKVEEEDEEGPNAVSRFRISEPLKAKLKE
KGVESLFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKALRKTGYGR
APSVLVLLPTRELAKQVHADFEVYGGTLGLVSCCLYGGAPYQSQEVKLKRGVDIVIGTPG
RVKDHIERGNIDFSSLKFRVLDEADEMLRMGFVEDVELILGKVEDTSKVQTLLFSATLPG
WVKQIASRFLNPSKKTADLVGNEKMKASTNVRHIVLPCSSSARSQLIPDIIRCYSSGGRT
IIFTETKDSASSLAGLLPGARALHGDIQQAQREVTLAGFRSGKFMALVATNVAARGLDIN
DVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSNISKIERESGVKFEHISA
PQQADIAKAAGGEAAEMITQVSDNVIPSFKSAAEELLNTSGLSAVELLAKALAKAAGYTE
IKKRSLLTSMENYVTVLVEAGSPIYTPTFAYRVLRRFLPEEKVEAVKGLALTADGKGAVF
DVPAEDLDTFLAGQENAANVSLEVLKALPSLQEREQSRGGRFGSGGRGGFGDRSGGRFSG
GRGGRGGGGGGFSGRGNNRFNNGSGGRGYGSNNKKW
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgccttcactagccttagctgatcctcttctctccgataccccaaagtacaagaaggag
aagaagaacaagaagatgaagagtatggaaacagtaaacgcaactctagaagccgattct
ccgattaccaataagaagacgaagaagaagcgaaaggctctggagatcgaggaggcggaa
gaggggagcgagacgagctcggagctatttgatcctgtgaactggaaggccgaggattcg
gagaagaataaaaaaaataagaagctgaaaaaggggaaggttgaggaggaggatgaggag
ggtccaaatgcggtgtccaggtttcggatttcggagccgttgaaggccaagttgaaggag
aagggagtcgagtcattgtttccgattcaggcaatgaccttcgataccattctagacggt
tcggatttggtcggtcgcgcgcgcacgggtcagggtaaaacgcttgcctttgtgttgccc
atattggagtcactcacgaatgggccggctaaagctttgcgaaaaactggttatgggagg
gcaccaagtgttttggtactgttacctactagagaactggccaaacaggtgcatgctgac
tttgaagtttatgggggaacgttggggttggtttcatgctgtctatatggcggagctcca
taccaaagtcaagaggttaaactcaagagaggggttgatatagtcattggaacacctggt
cgagttaaggatcacatagagagggggaatattgactttagctctttgaagttccgggtc
cttgatgaggctgatgaaatgctgaggatgggttttgttgaagatgttgaactaattcta
ggaaaggtagaagatacaagtaaagttcaaacgcttctcttcagtgccaccctgcctggc
tgggttaagcagatcgcttctaggtttcttaatccaagcaagaaaactgctgaccttgtt
ggcaacgagaaaatgaaagctagtacaaatgttaggcatattgtccttccctgctctagc
tctgcaagatcccagcttattccagacattattcgctgttatagcagtggaggccggact
attatttttactgaaacaaaggattctgcttcttcacttgctgggttgttgcctggggca
cgagctttgcatggggatatacagcaggctcaacgtgaggtcacgcttgctggcttcagg
tctggaaagttcatggcattagtcgccacaaatgtggcggcacggggattggacatcaat
gatgtgcaattaattatccagtgtgaacctcctcgtgatgttgaagcctatatccaccga
tctggacgcacaggaagagctggtaatactggagttgcagtaatgctctatgatcccaga
aagtccaatatatctaagatagaaagagaatctggtgtgaagtttgagcacatatctgct
cctcagcaagctgatattgccaaagctgctggtggagaagctgcagagatgataacccaa
gtctctgacaatgtaattccttctttcaaatctgccgctgaggagttgctgaacacctct
ggtctgtcagctgttgaattacttgcaaaagctcttgccaaggctgctggttatacagag
ataaagaaaagatcacttctcacttcaatggagaattacgtcacagtacttgttgaggct
ggaagtccaatctatacaccaacatttgcttatagagtcctgaggagattcttgcctgag
gagaaggttgaggcggtgaagggtcttgctctcacagccgatggaaagggtgcagtgttt
gatgttcctgctgaagacttggatacgtttcttgctggtcaggagaatgcagctaatgtg
agcttagaagtgttgaaagcattgccaagcttgcaagaaagagaacagtcaagaggggga
agatttggtagtggtggtcggggtggttttggtgatagaagtgggggcaggttttctggt
ggaagaggtggcaggggtggtggtggtggtggtttttccggccgaggaaataataggttt
aacaatggctctggtgggaggggttatggcagcaacaacaaaaaatggtga
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