Carya illinoinensis (pecan): 122308249
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Entry
122308249 CDS
T08745
Name
(RefSeq) polypyrimidine tract-binding protein homolog 1-like isoform X1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122308249
Spliceosome [BR:
cill03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
122308249
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_8
DUF4523
Motif
Other DBs
NCBI-GeneID:
122308249
NCBI-ProteinID:
XP_042977396
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Position
4:1457759..1465373
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AA seq
471 aa
AA seq
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MSTSGQPQFRYTQTPSKVLHLRNLPWECAEEELIELCKPFGKIVNTKCNVGANRNQAFVE
FADLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVE
AGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFSDAETASAARNALNERSIPRYLL
PEHVNSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAIDGIAQPALGPDGKRKEP
ESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDISTAAVARE
ALEGHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTIPDASLLAAQPVSGLPGAPATW
QNPQAGPIYPGNDFTAGGAAPPHYPGGQMAPWDPTMQAGRIPFGSVGSTYPGQPFAGSVP
AYATAAVPAGSSPLTPTSQIPTTSMGFSPMVPTNVRPGDASPPGQHTYYGQ
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacatcggggcagcctcagttccgctacacccagaccccctcgaaggtcctccac
ctccgcaatctcccctgggagtgcgccgaggaggagctcatcgagctctgcaagcccttc
ggcaagatagtcaacaccaagtgcaacgtcggcgccaatcgcaaccaggccttcgtcgaa
ttcgcagatttaaatcaggctatatcaatggtttcatattatgcatcatcttcagagcct
gcacaagttcgtggcaaaactgtgtatattcaatattcaaatagacatgaaattgtgaac
aacaaaagtccgggagatgttcctggaaatgtcttgcttgttaccattgagggtgtagaa
gctggtgatgttagcattgatgtgattcacttggtcttttctgcttttggctttgtgcat
aaaattgctacctttgaaaaggctgcaggtttccaggcattaatccagttcagcgatgct
gagactgcatctgcagcaaggaatgccttaaacgaaagaagcatacccaggtatttgctt
ccagagcatgttaattcatgtcacttgcgtatttcatattcggcacacactgatctgaac
attaagttccagtctcacagaagcagggactatacgaatccatacttacccgttaatcct
actgcaattgatggaattgctcagcctgctttagggcctgatggaaaaaggaaagaacct
gagagtaatgttcttcttgcctcgatagagaatatgcagtatgctgtcactgtggatgtt
cttcacacggttttctctgcattcggtaccgtccagaaaattgctatatttgagaagaat
ggtcaaacccaggcacttatccaatatcctgatattagcaccgcagcagttgccagggag
gctttagagggacattgcatatatgatggtggctattgtaagcttcatctatcatactct
cgtcatactgatctcaatgtaaaggcttacagtgataaaagtagagattatacaatccca
gatgcgagtttgcttgcagcgcaaccagtgtcaggtctccctggtgctccagcaacttgg
caaaatcctcaggctggtccaatctatcctggaaatgattttactgctggaggtgctgcg
ccacctcactatcctggtggacagatggctccatgggatcccaccatgcaggctggcaga
atcccatttggctcggttggtagcacttatcctggtcaaccttttgcaggctcggttcct
gcatatgccactgcagcggtgccagcaggttcctcaccactcacacctaccagccaaatt
cctactacctcaatgggattttctccaatggttccaacgaatgtgcgacctggtgatgct
tcacctcctggtcagcatacatactatggtcaatag
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