Carya illinoinensis (pecan): 122308430
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Entry
122308430 CDS
T08745
Name
(RefSeq) probable small nuclear ribonucleoprotein F
KO
K11098
small nuclear ribonucleoprotein F
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122308430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122308430
03041 Spliceosome [BR:
cill03041
]
122308430
03032 DNA replication proteins [BR:
cill03032
]
122308430
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
122308430
Spliceosome [BR:
cill03041
]
Complex A
U1 snRNP components
Sm proteins
122308430
U2 snRNP components
122308430
Complex B
U1 snRNP components
122308430
U4/U6.U5 tri-snRNP components
122308430
Complex C
U2 snRNP components
122308430
DNA replication proteins [BR:
cill03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
122308430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF6454
Motif
Other DBs
NCBI-GeneID:
122308430
NCBI-ProteinID:
XP_042977687
LinkDB
All DBs
Position
4:17735247..17743567
Genome browser
AA seq
87 aa
AA seq
DB search
MSIPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLASVDSYMNLQLANTEEYIDGQFTGNLG
EILIRCNNVLYLRGVPEDEEIEEADRD
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atgagcataccagttaacccaaaacctttcttgaacaatttgactgggaagccagtcatt
gtgaaactcaaatggggaatggagtacaaaggttttcttgcttctgtggattcatacatg
aacttacagctagcaaacactgaggaatatattgatgggcaattcactggaaatctggga
gagattttgatcagatgtaacaatgttctctaccttcgcggggtgccagaagatgaagaa
attgaagaagccgatcgagactaa
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