Carya illinoinensis (pecan): 122308435
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Entry
122308435 CDS
T08745
Name
(RefSeq) ubiquitin receptor RAD23c-like
KO
K10839
UV excision repair protein RAD23
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03420
Nucleotide excision repair
cill04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122308435
09124 Replication and repair
03420 Nucleotide excision repair
122308435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
cill03051
]
122308435
03400 DNA repair and recombination proteins [BR:
cill03400
]
122308435
Proteasome [BR:
cill03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
122308435
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
122308435
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
Rad60-SLD
UBA_7
CUE
Rad60-SLD_2
UBA_RAD5A
Dsc3_N
TECR_N
UBA_3
Crinkler
Ubiquitin_4
Motif
Other DBs
NCBI-GeneID:
122308435
NCBI-ProteinID:
XP_042977694
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Position
4:complement(3548001..3553299)
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AA seq
380 aa
AA seq
DB search
MKIFVKTLKGTHFEVEVKPDDTVADVKQNIEALQGSVVYPAAQQMLIHQGKVLKDATTLE
ENKVAENSFVVIMLTKNKVSSSGASSTTSVPTSQAQPVSWPPTLIQPAPSSQPPPSTPAP
METASENTPLVVPPASSESDVYGLAASNLVAGNNLEATVQQILDMGGGSWDRDTVVRALR
AAFNNPERAVEYLYSGIPEQADVPAVARVPASGQAVNPPAQAPQPAAPTSGPNANPLDLF
PQGLPAMGTNAGAGTLDFLRNSQQFQALRLMVQANPQILQPMLQELGKQNPQLMRLIQEH
QADFLRLINEPVEGEGNLLGQGASAMPQAVTVTPEERQAIERLEAMGFDRALVLEVFFAC
NKNEELAANYLLDHMHEFED
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgaagatctttgtaaagactctcaagggtactcacttcgaggtcgaagtgaaacccgat
gacacggttgctgatgtcaagcaaaatatagaggctctacagggctctgtggtttacccg
gcggcacaacagatgcttattcatcaggggaaagttctcaaggacgccacaacacttgag
gaaaataaagttgcggagaatagttttgttgtcatcatgttaaccaagaataaagtctca
tcaagtggagcctcaagtacaacaagtgtacccacgagccaagcgcaacctgttagttgg
cctcctaccttgatacaaccagcaccatcatctcaacctcctccctcaactccagcacca
atggagactgcctctgaaaacactcctcttgttgtccctcctgcttcttctgaatcagat
gtctatggactagcagcatcaaatcttgttgcaggaaataatttagaggctactgttcag
cagattctggatatgggtggaggaagctgggatcgggacactgttgtccgtgctttacgt
gctgcttttaacaaccctgaaagagctgttgaatatctatattccggaattcctgagcaa
gctgatgttcctgcagttgctcgagttcctgcaagcgggcaggcagtaaaccctcctgcc
caggctccacaaccggcagcacctaccagtgggccgaatgcaaaccccctagatctgttc
ccacagggtcttcccgctatgggtacaaatgccggtgcaggaaccttggacttcttgcga
aacagtcaacagttccaagccttgcgacttatggtgcaagcaaacccccaaatattgcag
cctatgctccaggagcttggaaagcaaaatccgcaactaatgcgcctgattcaagagcat
caggctgatttcttacgcctaataaatgaaccagttgaaggagaagggaacctactgggt
cagggggcttcagcaatgccccaggctgtgactgtcacccctgaggagcgtcaggccatt
gaacgtcttgaagctatgggatttgaccgggccctagtattggaggttttctttgcatgc
aacaagaatgaggagctggcagccaactatcttttagatcatatgcatgagtttgaggat
tga
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