Carya illinoinensis (pecan): 122308539
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Entry
122308539 CDS
T08745
Name
(RefSeq) pre-mRNA-splicing factor SLU7-A
KO
K12819
pre-mRNA-processing factor SLU7
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122308539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122308539
Spliceosome [BR:
cill03041
]
Complex C
Other components
Step II factors
122308539
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Slu7
CrtC
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
122308539
NCBI-ProteinID:
XP_042977849
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Position
4:43075000..43080699
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AA seq
535 aa
AA seq
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MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERP
SLKHQRKWKSDPNYTKSWYDRGAKIYQADKYRKGACENCGSMTHDAKACMERPRKVGAKW
TNKHIAPDEKIETFELDYDGKRDRWNGYDASTYAYVIERYEARDEARRKYLKDQQLKKLE
KNNNQNGEAEVSDEDDDEDDLRVDEAKVDESKQMDFAKVEKRVRTTGGGSTGTVRNLRIR
EDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPNEKFYGGDNQHRNSGEALEFKQLNIH
AWEAFDKGQDIHMQAAPSQAELLYKNYKVIKEKLKSQTKDTILEKYGNAATEEDIPMELL
LGQSEREVEYDRAGRIIKGQEKALPRSKYEEDVFINNHTSVWGSWWMDHQWGYKCCKQTI
RNSYCTGAAGIEASEAATDLMKANIARKEATEEIPSPVEEKRLATWGTDVPDDLVLDEKL
LAEALKKEDGRRREERDERKRKYNVRWNDEVTLEDMEAYRMKKVHHDDPMKDFLH
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccgcttcagttgctttcaagtctagggaggaccatcgtaagcaaattgaattg
gaagaggcgcgtaaagctgggcttgcaccagctgaggttgacgaggatggaaaagagatc
aaccctcacattccccagtatatgtcatctgcaccttggtatctcaacgctgagagacct
agtttaaaacatcaaaggaagtggaagtcagatccgaattacaccaagtcatggtatgac
agaggtgccaaaatttatcaggctgataagtacaggaagggtgcatgtgaaaactgtgga
tccatgacacatgatgcaaaggcatgtatggaaagaccccggaaagtgggagcaaagtgg
acaaacaaacacattgcacctgatgaaaaaatagagacctttgagcttgactatgatggt
aaacgggaccgttggaatggatatgatgcatccacctatgcctatgtcattgagagatat
gaagcaagggatgaagctcgaaggaaatacctgaaagatcaacagcttaagaaacttgag
aaaaacaataaccaaaatggtgaggctgaggtaagcgatgaggatgatgatgaagatgat
ctcagggtggatgaagccaaggttgatgagagcaagcaaatggactttgcaaaggttgaa
aagcgtgtacgcacaacaggcggtgggagtactggaactgtgaggaacttgcgtattcgg
gaggacacggcaaaatatcttttaaatcttgatgtcaactctgcgcactatgatcccaaa
acacggtctatgcgtgaagatcctcttccagatgcagatccgaatgagaagttctatggg
ggagataaccaacataggaatagtggtgaagctttggagttcaagcagctcaacatccat
gcctgggaagcatttgataaggggcaagacattcatatgcaagcggctccatcccaagct
gagttgctttataagaattataaggtcattaaggagaaactgaagtcccaaacaaaagac
accatattggagaagtatggaaatgcggctactgaagaagacattccgatggagcttcta
ctaggacaaagtgaaagagaagttgaatatgatcgtgctggcaggatcataaaagggcag
gagaaagcacttccaagaagcaagtatgaagaagatgttttcatcaacaaccatacaagt
gtttggggttcatggtggatggatcatcagtggggttacaagtgctgcaagcaaacgatc
cgaaacagctactgcactggtgctgctggaatagaagcttctgaggctgcaacagatctt
atgaaggctaatattgctcgtaaggaagctactgaagagataccttcaccggtggaggag
aaaaggcttgctacttggggaactgatgtcccagatgacttggttttggatgagaagtta
ctggctgaagcacttaaaaaggaggatggaaggaggagagaagagagagatgagagaaag
cgcaaatacaatgttagatggaatgatgaggttacacttgaggatatggaggcatacagg
atgaagaaagtacatcatgatgatccaatgaaggacttcttacactag
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