KEGG   Carya illinoinensis (pecan): 122308907
Entry
122308907         CDS       T08745                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
cill  Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:cill00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:cill03009]
    122308907
Ribosome biogenesis [BR:cill03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    122308907
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WDR55 EIF3I Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 NBCH_WD40 Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_DCAF4 Beta-prop_HPS5 ANAPC4_WD40 WDR90_beta-prop_4th WD40_MABP1-WDR62_2nd Beta-prop_IP5PC_F Beta-prop_IFT140_1st Beta-prop_VPS8 Beta-prop_RIG_2nd Beta-prop_Vps41 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_SPT8 Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_LRRK2 Beta-prop_WDR75_1st Beta-prop_BBS7 WDR54 WD_LRWD1 GCN5L1 PROPPIN PEP5_VPS11_N Ge1_WD40 DUF4363
Other DBs
NCBI-GeneID: 122308907
NCBI-ProteinID: XP_042978116
LinkDB
Position
5:complement(31862824..31869166)
AA seq 448 aa
MEVVVASSSVDAGIGSWDLATGSELLRYKSCASTPHGLVCVGQRFLASSQLRDPSASSGS
VLYWSWSKPQVEVKSFPAEPIKPLTANHEGTYIVGGGVSGDIYLWEVASGRQLRKWHAHY
RAVTCLVFSDDDSLLISGSEDGSVRVWSLFLMFDDIRQQEASHLYEHNFSEHTLRVTDIV
TGYGGCNAIIVSASEDRTCKVWSLSKGKLLRSIVFPSIIDAITLDPGEHVFYAGSRDGKI
YIAAINAESTSKNNYGLHIIKSLSNHSKAVTCLVYCASGNLLISGSEDGIIRLWDAKTHN
IVRMFKHAKGPVNNILIVRQELCFNSRPISQASSRRRGPLLPPALEKYSNPLDEDADAKA
IFDLHSTCRKPVNASYLNSHVIDNQIKELQQQGSSAAAEMETKRLKLDCSKSMQMVQQWK
KMYENLHQFCVNELLDDAQVRISNGNST
NT seq 1347 nt   +upstreamnt  +downstreamnt
atggaggtagtggtggcttcgtcttcggttgacgccggcatcggaagctgggacctagca
accggttcggagctactccgatacaaatcttgcgcttctacgcctcacggtctcgtctgc
gtcggccaacgattcctagcctcctctcagctccgcgacccctcagcctcctctggctcc
gtcctatactggtcctggtccaagcctcaagtagaagttaagagctttccagcagaaccg
attaagccgctcactgctaaccatgaaggcacttatattgtcggtggaggtgtatctggt
gatatttacttgtgggaggttgcaagtggtaggcagcttagaaagtggcatgcacattat
agggctgttacttgcttggtcttttcggatgatgactcgctgctaatttccggttcagaa
gatggatccgttagagtttggtcccttttcttgatgtttgatgatataagacagcaggaa
gctagtcatctatatgagcacaatttttcagagcacactttgcgtgtaactgacattgtc
acaggatatggaggatgcaatgccattatagtgtcagcttctgaagatcgaacctgtaag
gtctggagcttatcaaaagggaaattgttaagaagtattgtattcccttcaataattgat
gcaattactcttgaccctggcgaacatgtcttctatgctggcagtagggacggcaagata
tacattgctgcaattaatgctgaaagcacctctaagaacaattatgggttgcatatcata
aaatccttatcaaatcacagcaaggctgttacttgcttagtatattgtgcaagtggaaat
cttttaatttctggatcggaagatggtattatacgactttgggatgcaaaaactcacaac
attgttcgcatgttcaaacatgctaaaggtcctgtgaacaatattcttattgtcagacaa
gaactctgctttaattctcggccaatttcgcaagcttcctcaagaaggcgtggcccgtta
ttaccacctgctcttgaaaaatattcaaatccactggatgaagatgcagatgccaaggct
atttttgatctccactctacttgcaggaaaccagttaatgcttcgtacttaaattctcac
gtgattgataatcaaatcaaagaacttcagcaacaaggttcttctgctgctgctgaaatg
gagacgaaaaggctaaagcttgattgtagtaaatctatgcaaatggttcagcagtggaag
aaaatgtatgaaaacttgcatcaattttgtgtgaatgagcttttggatgatgctcaagtg
agaatctccaacggaaactctacctga

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