KEGG   Carya illinoinensis (pecan): 122308946
Entry
122308946         CDS       T08745                                 
Name
(RefSeq) E3 ubiquitin-protein ligase RNF4
  KO
K22651  E3 ubiquitin-protein ligase RNF4 [EC:2.3.2.27]
Organism
cill  Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:cill00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cill04121]
    122308946
Enzymes [BR:cill01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     122308946
Ubiquitin system [BR:cill04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    122308946
SSDB
Motif
Pfam: zf-C3HC4_2 zf-RING_2 zf-C3HC4 zf-C3HC4_3 zf-RING_5 zf-RING_UBOX zf-C3HC4_4 zf-RING_10 zf-rbx1 Rtf2 Prok-RING_4 Zn_ribbon_6 zf-Nse zf-RING_4 zf-ANAPC11 RING_XB3-XBAT31 Zn_ribbon_HMPTM zf-RING_11 zf-RING_6 Sina_RING Zn_ribbon_19 TRAF3_RING
Other DBs
NCBI-GeneID: 122308946
NCBI-ProteinID: XP_042978165
LinkDB
Position
1:7754626..7760313
AA seq 207 aa
MSSRAARGAPVRGYRRRKTVLDLDLNTAPPSDSRDLEGTSTQVEHNGIQGRSALPAMIDV
EAIDDDVVESSPRAFAQAKNNSRRNGGRAVVDVDLEERTRVAQNNRNKRRRDPPNQTIIN
CDLYINLESSSNSTRESVTKLPSPPKEPTFTCPICMGPLVEEMSTRCGHIFCKTCIKTAM
RAQSKCPTCRKHITAKELIRIFLPTTS
NT seq 624 nt   +upstreamnt  +downstreamnt
atgagttctcgggcagccaggggggctcctgtaagagggtaccgtcgtcggaagacggta
ctggacttagacctcaacactgcaccaccaagtgacagtcgggatctggaggggacctca
acccaggtggagcataatggaattcaagggcggtctgcgctacctgccatgattgatgtt
gaggccattgatgacgatgttgttgaatcttccccaagggcttttgctcaggccaaaaac
aattccagaaggaatggtggaagggctgttgtggatgtggatctagaagaaaggactagg
gttgcccagaataaccgtaacaagcgaagaagagatccacccaaccaaacaattattaat
tgtgatttatacataaatttggaaagcagcagtaactctacgagagagagtgtgacaaag
ctgccttcaccaccaaaggagcccacatttacctgtccaatttgtatgggtccattagtt
gaagaaatgtctacgaggtgtggtcacatattctgtaagacatgtattaagactgcaatg
cgtgcacagagtaaatgccccacttgtcggaaacacatcacagccaaagaactcattaga
atctttcttcctacaaccagttaa

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