KEGG   Carya illinoinensis (pecan): 122308951
Entry
122308951         CDS       T08745                                 
Name
(RefSeq) transducin beta-like protein 3
  KO
K14555  U3 small nucleolar RNA-associated protein 13
Organism
cill  Carya illinoinensis (pecan)
Pathway
cill03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:cill00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    122308951
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:cill03009]
    122308951
Ribosome biogenesis [BR:cill03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    122308951
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Utp13 WDR55 EIF3I Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_EIPR1 NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_RIG_2nd ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_Nup120_160 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_DCAF12 WD_LRWD1 Beta-prop_NWD2_C PEP5_VPS11_N Beta-prop_Vps41 Beta-prop_HPS5 Cytochrom_D1 KNTC1_N Ge1_WD40 WDR54 Nucleoporin_N Beta-prop_NOL10_N WD40_like
Other DBs
NCBI-GeneID: 122308951
NCBI-ProteinID: XP_042978167
LinkDB
Position
5:40863711..40890746
AA seq 880 aa
MTVPLKKNYRCVPSLQQFYTGGPFAVSSDGSFIACACDESIRIVDSSNASLRSTIDTDSE
APTALALSPNDKLLFSAGHSRQIRVWDLSTRKCVRSWKGHEGPVMGMACHLSGGLLATAG
ADGKVLVWDVDGGFCTHYFKGHSGVVSSIMFHPDTNRSLLFSGSADATVRVWDLLAKKCV
ATFKKHESAVTSIAVSEDGRILLTAGRDKVVHLWDLHDYGFIKTVLTYEVLEAVCVIHSG
SLFASFLASFYKQSKKKKSVSSAIHFVTVGERGIVRIWNSESAACLFEQKSSDITASSDM
DRGFTSAVMLPVDQGLVCVTADQQFLFFAPVEHTEGMFKLALSRRLVGYNEEIVDMRFVG
EEEKFLAVATNIEQVRVYELVDMSCSYVLAGHTETVLCLDTCVSSSGRTLIATGSKDNSV
RLWESERRCCIGVGVGHMGAVGAIAFSKKRKDFFVSGSSDRTLKVWSWDSLVDEVVQPIN
LKAKAVVAAHDKDINSLAIAPNDGFVCSGSQDRTACVWRLPDLVSVVVLKGHKRGIWSVE
FSPVDQCVITASGDKTIKIWAISDGSCLKTFEGHTSSVLRASFISRGTQFVSCGADGLVK
LWTVKTNECIATYDKHEDKVWALAVGKKSEMLATGGGDAVINLWYDCTADDKEEAFRQEE
EGVLKGQELENAVSDADYIKAIQIAFELRRPHKLFAMFAELCRKRDAQGQIDKALHGLGK
DEFRLLFEFVREWNTKPKLCHVAQFMLFRVFNILPPTEIIEIKGIGELLEGLIPYSQRHF
SRIDRLVRSTFLLDYTLTGMSVIEPEIDEKERKDGSLKHSHVKHVDEVLSTENADSEQKQ
DSEERQAASKKRKSKKSKDGTNKKVKSVAYTSVEARSLQA
NT seq 2643 nt   +upstreamnt  +downstreamnt
atgacagtaccgttgaagaagaactaccgctgcgtgccctctcttcagcagttctacacg
ggcggacccttcgccgtctcttcggacggctcattcatcgcgtgcgcctgcgacgaatcc
atccggatcgttgattcttccaacgcctcgctaaggtccacgatagacacggactcggag
gcccccacggccttggcgcttagccccaatgacaagttgctcttctccgccggccacagt
cgccagattagggtctgggatttgtccacccgcaagtgcgtgcggtcttggaagggtcat
gaaggtcctgtgatgggtatggcttgccacttgtccggaggattacttgcaactgctgga
gctgatgggaaagtccttgtttgggacgttgatggtggcttttgcactcattacttcaag
ggccattcaggggttgtttctagtattatgttccatcctgatacgaatagatcacttctt
ttctctggaagtgctgatgcaacagtacgagtctgggatcttttagctaagaagtgtgtt
gcaacatttaaaaagcatgagtcagcagtaacttctattgctgtatctgaagatggaagg
atcttgctcactgctggaagagataaggttgtgcacttgtgggaccttcatgactatggt
ttcataaagaccgttctaacatatgaggtactcgaagcagtgtgtgtgattcattctggg
agcctctttgcttcattcctggcttcattctataagcaaagcaagaagaagaaaagtgtg
tcatcggcaattcattttgtcacagttggtgaacgtgggattgtaagaatatggaactct
gaaagtgcggcttgcttgtttgagcaaaagtcatctgatatcactgccagctcagacatg
gataggggcttcacgtctgcagtaatgctgcctgtagatcaaggattggtttgtgtgact
gctgatcagcagtttcttttctttgcccctgtagaacacacagaagggatgtttaaatta
gcattaagcagaagacttgttggatacaacgaagagattgtggatatgaggtttgtaggt
gaagaggaaaaattccttgctgttgccacaaatattgaacaggtacgagtgtatgagcta
gtggacatgtcatgttcttatgtgttagctggtcatactgaaactgttctatgccttgac
acctgtgtatcaagttctggaagaacactaattgccactggaagtaaggacaacagtgtt
aggctgtgggaatcagaaagaagatgttgtattggagttggtgttggtcatatgggagcc
gttggagccattgctttctcaaagaagcggaaggacttctttgttagtggcagtagtgat
cgtactcttaaagtctggagttgggacagtctcgtagatgaggtggtgcagcctattaat
ttgaaagcaaaagcagttgtagctgctcatgataaggatatcaattctctagcaattgca
ccaaatgatggctttgtttgcagtggttctcaggatcgcactgcttgtgtttggaggctt
ccagatctggtatcagtagttgtacttaaagggcataaaaggggcatttggtcagtagag
ttttctcctgttgatcaatgtgtcataacagcatcaggtgataaaacgataaagatatgg
gctatatctgatggttcgtgcttgaaaacatttgaagggcatacatctagtgtattaaga
gcatcctttatttctcgtgggacccaatttgtttcttgtggtgctgatggccttgtaaag
ctatggaccgtcaaaaccaatgagtgcattgctacatatgataagcatgaggacaaggtt
tgggctttagctgttgggaagaagtcagaaatgcttgctactggtggtggtgatgctgtt
atcaatttgtggtatgattgtactgctgatgataaagaagaggctttccgtcaagaggag
gagggggttctgaaaggccaggaattagaaaatgccgtatcagatgctgactacattaag
gcaatacaaattgcgtttgaacttcgcaggcctcataaactctttgcaatgtttgctgaa
ctttgcaggaagagagatgctcaaggtcagatagataaagctcttcatggccttggcaag
gatgagtttcgtcttttgtttgaatttgttcgagaatggaataccaaaccaaagctctgt
catgttgctcaattcatgctgttcagggttttcaacattcttcctccaacggagattatt
gagataaaagggataggggaactccttgaaggtcttatcccatattctcagaggcatttt
agcaggatagacaggcttgtaagaagcacttttttgttggactacactctaactggaatg
tcagttattgaaccggaaattgatgaaaaagaaaggaaagatgggtctttgaagcactct
catgttaagcatgtggatgaggtgctttcgacagaaaatgctgattcagaacaaaaacag
gattcagaagaacggcaggccgcttcaaagaaacggaaatcaaagaaatccaaagatggt
acaaataagaaggtgaagagtgtggcatacacgagtgttgaagctcgttcattacaggca
tga

DBGET integrated database retrieval system