Carya illinoinensis (pecan): 122308951
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Entry
122308951 CDS
T08745
Name
(RefSeq) transducin beta-like protein 3
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122308951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cill03009
]
122308951
Ribosome biogenesis [BR:
cill03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
122308951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Utp13
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_Nup120_160
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_DCAF12
WD_LRWD1
Beta-prop_NWD2_C
PEP5_VPS11_N
Beta-prop_Vps41
Beta-prop_HPS5
Cytochrom_D1
KNTC1_N
Ge1_WD40
WDR54
Nucleoporin_N
Beta-prop_NOL10_N
WD40_like
Motif
Other DBs
NCBI-GeneID:
122308951
NCBI-ProteinID:
XP_042978167
LinkDB
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Position
5:40863711..40890746
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AA seq
880 aa
AA seq
DB search
MTVPLKKNYRCVPSLQQFYTGGPFAVSSDGSFIACACDESIRIVDSSNASLRSTIDTDSE
APTALALSPNDKLLFSAGHSRQIRVWDLSTRKCVRSWKGHEGPVMGMACHLSGGLLATAG
ADGKVLVWDVDGGFCTHYFKGHSGVVSSIMFHPDTNRSLLFSGSADATVRVWDLLAKKCV
ATFKKHESAVTSIAVSEDGRILLTAGRDKVVHLWDLHDYGFIKTVLTYEVLEAVCVIHSG
SLFASFLASFYKQSKKKKSVSSAIHFVTVGERGIVRIWNSESAACLFEQKSSDITASSDM
DRGFTSAVMLPVDQGLVCVTADQQFLFFAPVEHTEGMFKLALSRRLVGYNEEIVDMRFVG
EEEKFLAVATNIEQVRVYELVDMSCSYVLAGHTETVLCLDTCVSSSGRTLIATGSKDNSV
RLWESERRCCIGVGVGHMGAVGAIAFSKKRKDFFVSGSSDRTLKVWSWDSLVDEVVQPIN
LKAKAVVAAHDKDINSLAIAPNDGFVCSGSQDRTACVWRLPDLVSVVVLKGHKRGIWSVE
FSPVDQCVITASGDKTIKIWAISDGSCLKTFEGHTSSVLRASFISRGTQFVSCGADGLVK
LWTVKTNECIATYDKHEDKVWALAVGKKSEMLATGGGDAVINLWYDCTADDKEEAFRQEE
EGVLKGQELENAVSDADYIKAIQIAFELRRPHKLFAMFAELCRKRDAQGQIDKALHGLGK
DEFRLLFEFVREWNTKPKLCHVAQFMLFRVFNILPPTEIIEIKGIGELLEGLIPYSQRHF
SRIDRLVRSTFLLDYTLTGMSVIEPEIDEKERKDGSLKHSHVKHVDEVLSTENADSEQKQ
DSEERQAASKKRKSKKSKDGTNKKVKSVAYTSVEARSLQA
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgacagtaccgttgaagaagaactaccgctgcgtgccctctcttcagcagttctacacg
ggcggacccttcgccgtctcttcggacggctcattcatcgcgtgcgcctgcgacgaatcc
atccggatcgttgattcttccaacgcctcgctaaggtccacgatagacacggactcggag
gcccccacggccttggcgcttagccccaatgacaagttgctcttctccgccggccacagt
cgccagattagggtctgggatttgtccacccgcaagtgcgtgcggtcttggaagggtcat
gaaggtcctgtgatgggtatggcttgccacttgtccggaggattacttgcaactgctgga
gctgatgggaaagtccttgtttgggacgttgatggtggcttttgcactcattacttcaag
ggccattcaggggttgtttctagtattatgttccatcctgatacgaatagatcacttctt
ttctctggaagtgctgatgcaacagtacgagtctgggatcttttagctaagaagtgtgtt
gcaacatttaaaaagcatgagtcagcagtaacttctattgctgtatctgaagatggaagg
atcttgctcactgctggaagagataaggttgtgcacttgtgggaccttcatgactatggt
ttcataaagaccgttctaacatatgaggtactcgaagcagtgtgtgtgattcattctggg
agcctctttgcttcattcctggcttcattctataagcaaagcaagaagaagaaaagtgtg
tcatcggcaattcattttgtcacagttggtgaacgtgggattgtaagaatatggaactct
gaaagtgcggcttgcttgtttgagcaaaagtcatctgatatcactgccagctcagacatg
gataggggcttcacgtctgcagtaatgctgcctgtagatcaaggattggtttgtgtgact
gctgatcagcagtttcttttctttgcccctgtagaacacacagaagggatgtttaaatta
gcattaagcagaagacttgttggatacaacgaagagattgtggatatgaggtttgtaggt
gaagaggaaaaattccttgctgttgccacaaatattgaacaggtacgagtgtatgagcta
gtggacatgtcatgttcttatgtgttagctggtcatactgaaactgttctatgccttgac
acctgtgtatcaagttctggaagaacactaattgccactggaagtaaggacaacagtgtt
aggctgtgggaatcagaaagaagatgttgtattggagttggtgttggtcatatgggagcc
gttggagccattgctttctcaaagaagcggaaggacttctttgttagtggcagtagtgat
cgtactcttaaagtctggagttgggacagtctcgtagatgaggtggtgcagcctattaat
ttgaaagcaaaagcagttgtagctgctcatgataaggatatcaattctctagcaattgca
ccaaatgatggctttgtttgcagtggttctcaggatcgcactgcttgtgtttggaggctt
ccagatctggtatcagtagttgtacttaaagggcataaaaggggcatttggtcagtagag
ttttctcctgttgatcaatgtgtcataacagcatcaggtgataaaacgataaagatatgg
gctatatctgatggttcgtgcttgaaaacatttgaagggcatacatctagtgtattaaga
gcatcctttatttctcgtgggacccaatttgtttcttgtggtgctgatggccttgtaaag
ctatggaccgtcaaaaccaatgagtgcattgctacatatgataagcatgaggacaaggtt
tgggctttagctgttgggaagaagtcagaaatgcttgctactggtggtggtgatgctgtt
atcaatttgtggtatgattgtactgctgatgataaagaagaggctttccgtcaagaggag
gagggggttctgaaaggccaggaattagaaaatgccgtatcagatgctgactacattaag
gcaatacaaattgcgtttgaacttcgcaggcctcataaactctttgcaatgtttgctgaa
ctttgcaggaagagagatgctcaaggtcagatagataaagctcttcatggccttggcaag
gatgagtttcgtcttttgtttgaatttgttcgagaatggaataccaaaccaaagctctgt
catgttgctcaattcatgctgttcagggttttcaacattcttcctccaacggagattatt
gagataaaagggataggggaactccttgaaggtcttatcccatattctcagaggcatttt
agcaggatagacaggcttgtaagaagcacttttttgttggactacactctaactggaatg
tcagttattgaaccggaaattgatgaaaaagaaaggaaagatgggtctttgaagcactct
catgttaagcatgtggatgaggtgctttcgacagaaaatgctgattcagaacaaaaacag
gattcagaagaacggcaggccgcttcaaagaaacggaaatcaaagaaatccaaagatggt
acaaataagaaggtgaagagtgtggcatacacgagtgttgaagctcgttcattacaggca
tga
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