KEGG   Carya illinoinensis (pecan): 122308967
Entry
122308967         CDS       T08745                                 
Name
(RefSeq) exosome complex component RRP41 homolog isoform X1
  KO
K11600  exosome complex component RRP41
Organism
cill  Carya illinoinensis (pecan)
Pathway
cill03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cill00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    122308967
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cill03019]
    122308967
Messenger RNA biogenesis [BR:cill03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     122308967
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     122308967
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 122308967
NCBI-ProteinID: XP_042978192
LinkDB
Position
5:31811879..31816166
AA seq 241 aa
MEYVSPEGLRLDGRRPMEMRQIRAEIGAVAKADGSAVFEMGNTKVISAVYGPREVQNWSQ
QISDKALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACIMTHLMPRSQIDIF
VQVLQADGGTRSACINAATLALADAGIPLQDLVTSCSAGYLNSTPLLDLNYVEDSAGGPD
VTVGFLPKLDKVTLLQMDSKLSLDLFENVMQLAIEGCKAVANYIREILLENTKQLEYRRG
L
NT seq 726 nt   +upstreamnt  +downstreamnt
atggagtacgtgagccccgaaggacttcgcttggatggtcgccgtcccatggaaatgaga
caaattcgagcagagattggtgctgtggctaaagctgacgggtcggccgtgtttgagatg
ggtaacaccaaagtcatttcagcagtatatggccctagagaggtccaaaattggagtcaa
caaattagtgacaaggcgctggtgcgctgcgagtatagcatggctaactttagtactggg
gatcgaatgagaaaaccaaaaggtgacagacgatctacagagatatctctggttattcgc
cagacgatggaagcttgcataatgacacatttgatgcctcggtctcagatagatattttt
gtccaagttctccaagctgatggagggactagatctgcatgtatcaatgctgcaactttg
gcccttgcagatgctgggattcctttgcaggatcttgttacttcatgtagtgctgggtac
cttaatagcactcctcttcttgatttgaactatgtagaagatagtgctggaggtcctgat
gtcactgtagggtttctacctaagttggacaaagtgactcttcttcagatggattccaag
ttatcattagacctttttgaaaatgtcatgcaacttgcaattgaaggctgcaaagcagta
gcaaattacatccgggaaatattgctagagaataccaagcaactagagtatcgccggggc
ctatag

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