Carya illinoinensis (pecan): 122309413
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Entry
122309413 CDS
T08745
Name
(RefSeq) heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill00900
Terpenoid backbone biosynthesis
cill01100
Metabolic pathways
cill01110
Biosynthesis of secondary metabolites
Module
cill_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
122309413
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
cill01006
]
122309413
Enzymes [BR:
cill01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
122309413
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
122309413
2.5.1.29 geranylgeranyl diphosphate synthase
122309413
Prenyltransferases [BR:
cill01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
122309413
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
polyprenyl_synt
Motif
Other DBs
NCBI-GeneID:
122309413
NCBI-ProteinID:
XP_042978828
LinkDB
All DBs
Position
5:complement(9717719..9720253)
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AA seq
333 aa
AA seq
DB search
MAFSPVMSSGPHLYLPRRIPTNLKAPPIRCSSSSSLVSTQFDLKGYWTTLIGEINQSLEE
AIRVQYPEKIYEAMRHSVLSKGAKRAPPVMCVAACELFGGNRLVAFPTACALEMVHAASL
IHDDLPCMDDDPSRRGQPSNHTIYGVDMAILAGDALFPLGFRHIVSHTPVDLVPEARLLR
VITEIAQAVGSTGMAAGQFLDLEGSSNSVEFVQEKKFGEMGECSAVCGGLLAGAGDDEIR
RLRSYGRAVGMLYQVVDDVLEEKSRKIEEAGEPKKGKSYVGVYGVEKAMEVAEELRAKAK
RELDGFEKYGESVVPLYSFVDYAAYRGFSVGDC
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atggctttctcgccggtaatgtcgtccggacctcatctctacctgccaagaagaataccc
acaaacctcaaagcacctccgattcgctgctcgtcgtcttcttctctggtttccacccag
ttcgatctgaagggatattggacgaccttgattggcgagataaaccagagtctggaggag
gcgattcgggtgcagtacccggagaaaatctacgaggccatgcggcactcggtcctatca
aagggggccaagcgagctccacccgtcatgtgcgtcgccgcctgcgagctcttcggcggc
aaccgccttgtcgccttccccaccgcctgcgccctcgaaatggttcatgcagcttcactg
atccacgatgaccttccctgtatggatgatgatccttcacgccgaggccaaccctcaaac
cacacaatatatggagttgatatggcaatcctggccggggacgctctctttccactcggt
tttcgccacattgtctcccatacacctgttgacctcgtgcctgaagcccgtcttcttcgt
gtgattacagagattgcccaagctgtagggtccaccggcatggctgctggtcagttcctt
gaccttgagggcagttccaattctgttgaattcgtgcaagaaaagaagtttggggaaatg
ggtgagtgctctgcagtgtgtggagggctactagctggtgctggagatgacgaaatacgt
agattgaggagttatgggagagctgtagggatgttgtatcaagttgtggatgatgttttg
gaagagaagtcgaggaaaattgaggaagctggagagccaaagaaggggaagagttatgta
ggagtgtatggagttgagaaggcaatggaggtggcagaggagcttagggccaaggccaag
agggaattggatgggtttgagaagtatggtgagagtgtggtacctctttatagctttgtg
gattatgctgcttacagaggttttagtgttggtgattgttga
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