Carya illinoinensis (pecan): 122310204
Help
Entry
122310204 CDS
T08745
Name
(RefSeq) ATP-dependent helicase BRM isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122310204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122310204
03036 Chromosome and associated proteins [BR:
cill03036
]
122310204
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122310204
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
122310204
Chromatin remodeling factors
BAF complex
122310204
PBAF complex
122310204
GBAF(ncBAF) complex
122310204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
QLQ
Bromodomain
HDA2-3
AAA_14
Motif
Other DBs
NCBI-GeneID:
122310204
NCBI-ProteinID:
XP_042980016
LinkDB
All DBs
Position
1:10505425..10521718
Genome browser
AA seq
2258 aa
AA seq
DB search
MQSSGGGGAGPSRVGPAGRAASTSAASPSSSSSAAPTPHLGFDSMQQQQQQQIGSRQLLQ
QQFHRKPEGNEALLAYQSSLQGVMGGNNFSSSPGSMQLPQQSRKFIELAQQHGSSHEGLH
RSQAVEQQALNPVHQAYIQYALQAAQQKSQSQQHAKMGMLSPPSGKDQEMRMGNIKMQDL
ISMQVPTQAQASSLKNSSDHFGRGEKQMDQGQQSASEQRTEPKPPTQATGIGQLIPGNMG
RPSQAPQAQQNAQNSANNQLTMSAQLQAMHSWALERNIDLSLPANANLMAQLIPLMQSRI
VPQQKANESNMDAQSSSVPASKQQVTSPPVANESSPHTNSSSDMSGQSGPAKARQTVSPS
PFGSTSNAGIVNHSNNASLQQFSTHGRENQLPSRQPAVIGKGMPSMHPPQSSPNMSQGVD
HSLSAKNPMNGPETQQMQYLRQSSRSSPQAAVPTNDGGSGSNILPLGGSSSQMPQQRSGF
TKHQLHVLKAQILAFRRLKKGDPGLPQELLRAIAPPPLELQLQQQFPPAGGNIEEKSARN
IVADHPRHIESNEKDKHAVTSINGQSFPTEEAFGADDKATITTAHMQGVPVLMKDPSPVA
SAGKDEQQQSTVFSVKSDPDVERGTHRPPIRSDFPADRGKSVAPQGAVDAEQANKPAQAS
TAPQQKDISSNRKYHGPLFDFPFFTRKHDLFGSAMMVNSNNHLTLAYDVKDLLCDEGMEV
LTKKRSENLRKIGGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDLQARLRDEIDQQQQEI
MAMPDRPYRKFVRLCERQRMELTRQVQASQKAMREKQLKSIFQWRKKLLETHWAIRDART
ARNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGEAAERYA
VLSSFLTQTEEYLHKLGSKITAAKNQQEVEEAANAAAVAARIQGLSEEEVRAAATCAGEE
VMIRNRFMEMNAPKDSSSVSKYYNLAHAVNERVGRQPSMLRAGTLRDYQLVGLQWMLSLY
NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHNWLPSV
SCIFYVGGKDQRSKLFSQEVAALKFNVLVTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKD
RESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQK
EAPTPNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQ
SAIYDWIKSTGTLRVDPEDEKRRVQKNPIYQAKVYRTLNNRCMELRKACNHPLLNYPYFN
DLSKDFLVRSCGKLWIMDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLLYRRIDG
TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVA
RAHRIGQTREVKVIYMEAVVDKISSHQKEDELRSGGTVDMDDDLAGKDRYMASIEGLIRN
NIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLQEVNRMIA
RSKEEVELFDQMDEELDWAEEMTRYDQVPKWLRANTREVNATVATLSKRPSKNTILAGNI
IMESSEIGSDSSPKAERKRGRPKGRKHPNYKELDDENGEYSEASSEERNGSSIHEEEGEI
GEFEEDEFSGAVGAPPVNKDQLEEEGPVCGGEFEYPRASESTKNNHLLEEAGSSGSSSDT
RRLTQMVSPSVSSQKFGSLSALDARPGSLSRRLPDELEEGEIAVSGDSHMEHQQSGSWIH
DRDDGEEEQVLQPKIKRKRSLRVRPRHPVERPEEKSGNEAQSFQRGDSSLLPFQVDIKYQ
ALLRTDPETKPYGESNASKHDQNDSSSKNRRHLAPRRIANTSKLRASPKSSRLNCMSASL
EDNAEQSRESWDAKAMNSSGTTTFVSKMPENIQRRCKSVISKLQRKIGKEGPQIIPLLTD
LWKRIENSGYISGPGNNNLDLRKIDQRIDRLEYNGVMELVFDVQFMLKSAMHFYGFSYEV
RSEARKVHDLFFDILKNVFPDTDFREARNALSFSGSFSTTSAPSPRQAAVGPSKRHKLIN
EVEPDPGPPQKLLQRGLISSGEDARIRGHIPQKESRLGSGIGASREQCQQDDPPLLTHPG
ELVICKKKRKDREKSVVKPRTGSVGPVSPPSIGRGIRSPGPGSVPKDTRQTQQTTHSQGW
ANQPGPAQPANGDGGSVGWANPVKRLRTDSGKRRPSHT
NT seq
6777 nt
NT seq
+upstream
nt +downstream
nt
atgcaatccagtggaggaggtggcgctgggcccagccgggtgggtccggcagggcgggcg
gcatcaacttcagctgcgtcgccatcctcttcatcttcagccgcgcccacgccgcacttg
gggttcgattccatgcagcagcagcagcagcagcaaatagggtctaggcagttattacaa
caacagtttcatagaaaacctgaagggaatgaagcccttctagcatatcaatctagtctc
caaggagttatgggagggaacaatttcagttcatctcctggctctatgcaattgcctcaa
cagtccaggaaattcattgaattggctcaacaacatggttcctcccatgagggcctgcat
aggagtcaagctgttgagcaacaagcgctaaatccagtccatcaagcttatattcaatat
gctttgcaggctgctcaacaaaagtcgcaatcgcagcagcatgctaaaatgggaatgttg
agccctccatctgggaaggatcaggaaatgcgaatgggaaatattaaaatgcaggatctc
atttccatgcaggtgcctactcaggctcaggcatcatcattgaaaaactcatctgaccat
tttggtcgtggtgaaaagcagatggatcaaggacagcaatcagcctctgagcagaggact
gagccaaagcctccaacccaggcgacaggcattggacaattaatacctggaaatatggga
aggccttcacaagcaccacaagctcagcagaatgcccaaaactctgcaaacaaccagctc
acaatgtctgcccagttgcaggcaatgcattcatgggcacttgagcgcaatattgatctc
tccctgcctgcaaatgctaacttgatggcgcaactcattccattaatgcagtctaggatt
gttccacagcaaaaagcaaatgaaagtaatatggatgcacagtcatcatctgttccagcg
tcaaagcagcaagttacctctccgccggttgctaatgagagttctccccatactaattca
tcaagtgatatgtccggacagtcaggccctgcaaaagcaaggcagactgtttctcccagc
ccttttggttcaacttcaaatgctggcatagttaaccactctaacaatgcttcattgcag
cagttctccactcatggcagagagaatcagttgccttcaagacagcctgctgtgattggt
aagggaatgccttccatgcatcctccacagtcatcccccaacatgagccagggtgttgat
cattctctgagtgcaaaaaatccaatgaatggcccagaaactcagcagatgcagtatctc
aggcagtcaagtcgatcttctccacaagctgcagttcctactaatgatgggggctctggc
agcaacatccttccacttggtggatcaagtagtcagatgcctcaacagcgttctggattc
accaaacatcaattgcatgttcttaaagcacaaatactagcatttaggcgtctgaagaaa
ggagaccctggtctccctcaagaacttctccgggctattgctccaccacccctcgagctg
cagctgcaacagcaatttcctcctgcgggaggaaatattgaggaaaaatctgccaggaat
attgtcgctgaccatccgaggcatatagagtccaatgagaaggataaacatgctgtcaca
tcaattaatgggcaaagtttcccaacagaggaagcctttggggcagatgataaagcaacc
atcaccacagctcatatgcaaggtgtgccggttttaatgaaggatccttcaccagtggca
tctgctgggaaagatgagcagcagcaatccactgtattttctgtaaagtcagacccggat
gttgaacgaggtactcataggccccctattagaagtgattttccagcggataggggaaag
tctgttgcaccccagggagctgtagatgcagagcaagctaacaaacctgcacaagcaagc
actgcccctcagcagaaagacattagttccaacagaaagtatcatgggcccctatttgat
ttcccctttttcactaggaaacatgacttatttgggtcggcaatgatggttaacagcaat
aatcatctaacattagcatatgacgtcaaagatcttctttgtgatgaaggcatggaagtg
cttacaaagaaaaggtctgaaaatttaagaaagattggtggtttactggcagtgaactta
gagaggaaaaggattaggccagatcttgtcttgaggttgcaaattgaagagaaaaagctt
cgactgttagatctacaggcccggttaagagatgaaattgatcaacagcaacaggagata
atggcaatgcctgacaggccatataggaagtttgttagactgtgtgagcgccagcgtatg
gagctgaccagacaagtacaggcctcccagaaagctatgagagagaagcaactgaaatcc
atattccagtggcgtaagaagcttcttgagactcattgggccatccgtgatgcacgaact
gcacggaataggggggttgccaaatatcatgagaggatgttaagggagttttcaaaaaga
aaggacgatgatagaaataagaggatggaggcactgaaaaataatgatgtcgaaaggtat
agggagatgttgctggagcagcagacaagcatcccaggtgaggccgcagagagatatgct
gttctctcatcgttcttgactcagacagaagaatatctacataaactgggaagtaaaata
actgctgccaaaaatcaacaggaagtggaggaggcagcaaatgccgctgcagttgctgcg
cgaatacagggtctctctgaagaggaagttagggcagcggcaacttgtgcaggggaggaa
gtaatgataagaaatcggtttatggaaatgaatgcaccgaaggatagttcatctgtcagc
aagtattataatcttgcacatgctgtgaatgaaagggttggaaggcaaccctcaatgtta
cgggctggaaccttgagagactatcaacttgttgggttgcaatggatgctatcgctgtat
aacaataaattaaatggaatcttggcagatgagatgggtcttgggaagactgtacaggta
atggcattgatagcttacttgatggagttcaaaggaaactatggcccacatcttataata
gttccaaatgctgttctggtaaattggaagagtgagttacataattggctcccatctgtg
tcatgcattttttatgttggtgggaaggatcaacggtcaaaattattttctcaagaggtt
gctgctttgaaatttaatgtcctggtgacgacttatgagttcatcatgtatgatcgttcg
aaactttcaaaaattgattggaagtatattgtaattgatgaagcacaacggatgaaggat
agggaatcagttttagcacgtgatcttgatagatatcgctgccagaggcgcttgctactg
actgggacgccactacagaatgatttgaaggaactgtggtcacttctaaatctacttctt
ccggaagtttttgataatcggaaagcatttcatgactggttctcaaaaccctttcaaaag
gaagctcctacaccaaatgccgaggatgactggctagagactgaaaaaaaggtcatcatc
atccaccggcttcatcaaattctagagccctttatgctcaggcgtcgtgttgaagatgtg
gaaggctcacttccacccaaggtgtccatagttttaagatgtaggatgtcagctattcag
agtgccatttatgattggatcaaatccactggtactcttcgtgttgatcctgaagatgaa
aagcggagggttcaaaaaaatccaatttaccaggctaaagtgtatagaactctaaataac
agatgtatggaacttcggaaagcctgcaatcatcctttgttgaattatccatatttcaat
gacttgtcgaaggattttcttgtaagatcatgtgggaaattatggatcatggacaggatt
cttattaaacttcagagaactgggcatcgagtactgctctttagtaccatgacaaaactc
cttgatatattggaggaatacttgcaatggcggcggcttctatacaggcgaattgacgga
acaactagtttagaagatcgtgaatcggctattgtggactttaatagccatgattcagac
tgcttcattttcttgcttagtattcgtgctgcaggtagaggtcttaaccttcaatctgct
gatacagttataatatatgatcctgatccaaaccctaagaatgaggaacaggcagttgct
agggcccatcgtattggacagactagagaagtcaaagtcatttatatggaagctgttgtt
gataaaatctctagccatcagaaagaagacgagctaagaagtggaggtacggttgatatg
gatgatgaccttgctggtaaggatcgatatatggcttctattgagggcttgataaggaac
aacattcaacaatataaaattgatatggctgatgaggttatcaacgctgggcgttttgac
cagagaacaacacacgaagagagacgcctgactttagagacattattgcatgatgaggag
aggtatcaagaaactgtccatgatgtaccctccctgcaggaggtcaatcgcatgattgct
aggagcaaagaggaagttgagttgtttgatcaaatggatgaggaactggattgggctgaa
gagatgacgcggtatgatcaggtacccaagtggcttcgagcgaatactagagaagtaaat
gccactgttgcaactctttcaaaaagaccatcaaagaacactatattggctggtaatatt
atcatggaatctagtgaaataggttctgattcatctccaaaagctgaaaggaaaagggga
cggcccaaaggaagaaagcatcctaattacaaagaattagatgatgaaaatggggaatac
tctgaagcaagttctgaagagagaaatggatcctctatacatgaagaagagggagaaatt
ggagagtttgaagaggatgaatttagtggtgctgttggggcaccgccagtcaataaagac
caattggaagaggagggtccagtttgtggtggtgagtttgagtatcctcgggcttcagaa
agcacaaaaaataatcatttgctggaagaagcaggttcctctggatcatcctctgatact
cgaagattgacacaaatggtatcgccttctgtttcttctcagaagttcggttccctgtcg
gctttagatgctaggccaggttctctctccagaaggctgccagatgaactagaggaaggg
gaaattgcagtatctggagattctcacatggaacaccaacaatcgggaagttggattcat
gaccgtgatgatggcgaagaagaacaggttttgcaacccaaaataaaacgaaaacgcagt
cttcgagttcgtccccgccatccagtcgaaaggccagaggagaagtctggaaatgaagca
caatctttccagcgtggagattcatctcttttgccattccaagtggatattaagtatcag
gctctgttaagaactgaccctgaaacaaaaccttatggagagtccaatgcttctaagcat
gatcaaaatgattcgtcctccaaaaacaggcgacacttggcaccaaggagaatagctaat
acatcaaaattgcgtgcttcaccaaaatctagcagattaaattgcatgtctgcttctcta
gaagataatgccgaacagtcgagagaaagttgggatgctaaagctatgaattcaagtggg
acaacaacctttgtctctaagatgcctgaaaacatccagagaaggtgcaagagtgtaatt
agcaagctccaaaggaaaattggtaaggaaggtcctcaaattatacctctgcttacagat
ttgtggaagaggattgaaaactctgggtacataagtggaccaggaaataataatttggat
ttacgaaagattgatcagcgtattgacagattagagtacaatggagtgatggagcttgtg
tttgatgtccagttcatgttgaaaagtgcaatgcatttttatgggttctcatatgaggtg
agatctgaagcaaggaaagtgcatgatctctttttcgatatcttgaagaatgtatttcca
gacacagattttcgagaggccagaaatgcactctctttttcgggctcattttctaccact
tctgctccttccccaagacaagcagctgttggtccaagcaagagacacaagttgataaat
gaggtggaacctgacccaggccctccacagaagctactgcaacgtggactcatttccagt
ggggaagatgcaagaatcagaggtcatatcccccagaaggaatcaaggcttgggagtggt
attggtgctagtcgggagcaatgccagcaggatgatcctccacttctaactcatccagga
gagctggttatctgcaagaagaagagaaaagacagggagaaatcagtggtgaagcctagg
actggatcagtaggcccggtttcaccccctagcataggtcgtggtataagaagtccaggt
ccagggtcagtacccaaggacacaagacagacccaacaaactacgcattcgcaaggatgg
gccaaccaacctggtcctgctcaaccggcaaatggtgatggtgggtctgttggttgggca
aatcctgtgaagaggttgaggacagattctgggaaaagaaggccaagccatacatga
DBGET
integrated database retrieval system
