Carya illinoinensis (pecan): 122310792
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Entry
122310792 CDS
T08745
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X1
KO
K12844
U4/U6 small nuclear ribonucleoprotein PRP31
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122310792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122310792
Spliceosome [BR:
cill03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
122310792
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Gene cluster
GFIT
Motif
Pfam:
Nop
Prp31_C
Motif
Other DBs
NCBI-GeneID:
122310792
NCBI-ProteinID:
XP_042980867
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Position
5:20153562..20161130
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AA seq
485 aa
AA seq
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MATLADSFLADLDELSDNEADVIEEEDVDAGNMEEDVDGEMADIENLNYDDLDSVSKLQK
TQRYVDIMQKVEDALQKGSDISNLGMVLEDDPEYQLIVDCNALSVDIENEIIIIHNFIRD
KYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKP
LPEEILDKTIDACDRALTLDAAKKKVLDFVESRMGYIAPNLSTIVGSAVAAKLMGTAGGL
AALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEIFQSTPPSLRMRACRLLASK
STLAARVDSTRGDPSGNNGRALREEIRKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRR
LRKMKERYAITDMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSVGQSKLAA
KVAKKFKEKPYGSSGASSGLTSSLAFTPVQGIELSNPQAHAHQLGSGTQSTYFSETGTFS
KIKRT
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccctggctgattctttccttgcagaccttgatgaactatctgacaatgaagct
gatgttattgaggaagaagatgttgatgctggaaatatggaagaagatgttgatggggaa
atggcagacatagaaaatcttaactatgatgatctggatagtgtttcaaaattgcagaaa
acccagagatatgttgatattatgcagaaagtggaagatgcactccaaaaaggctctgat
atctcaaatcttgggatggttttggaagatgatcctgaatatcagctgattgtggactgt
aatgcgttgtcagttgatattgagaatgaaatcattattatccacaattttattcgtgac
aagtacaggttgaaatttccagagcttgaatcacttgtgcatcacccaattgattatgca
cgtgttgttaagaaaattgggaatgaaatggacttgaccctggttgatctggaagggcta
ttaccatcagctattattatggtcgtatctgttacagcatcaactacaagtggcaagcct
cttcctgaagaaattcttgataagaccattgatgcatgtgatcgagctcttactctagat
gcagcaaagaaaaaagtcctcgactttgtagaaagtcgaatgggatatattgcaccaaat
ctttctactattgttgggagtgctgttgcagctaaacttatggggactgctggtggtctt
gctgcattggctaagatgcctgcatgtaatgttcagcttcttggtgctaagaaaaagaac
cttgctgggttttccactgcaacatcgcaatttcgtgtcggctatattgagcaaacggag
atatttcaatctacacccccttctttgaggatgcgtgcttgtcggctcttggcttccaag
tcaacacttgcagcaagagtagattccacgagaggagatccatcagggaacaacggaaga
gccttacgggaagagatccgtaagaaaattgagaagtggcaagagcctcctcctgcaaag
caacccaaaccacttccagtgcctgattctgagcctaaaaagaagagaggtggtcgtcga
ctgaggaagatgaaggaaagatatgcaataacagacatgaggaaactcgcaaataggatg
caatttggtgtacctgaagagagttctttaggggatggactgggagagggttacggaatg
cttggtcaggctgggagtggcaagctgcgtgtatcagttggtcagagcaaacttgctgca
aaagttgccaagaagtttaaggaaaagccttacggaagcagtggtgcttcctctggattg
acgtcaagtttagcatttacccctgtgcaggggatagaactctcaaatccacaggctcat
gcacaccaacttggcagcggaactcaaagcacatacttttccgagacaggaacattttca
aagatcaagcggacatga
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