Carya illinoinensis (pecan): 122310839
Help
Entry
122310839 CDS
T08745
Name
(RefSeq) protein CHROMATIN REMODELING 35-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122310839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cill03400
]
122310839
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
122310839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
AAA_16
Motif
Other DBs
NCBI-GeneID:
122310839
NCBI-ProteinID:
XP_042980959
LinkDB
All DBs
Position
5:8051128..8058610
Genome browser
AA seq
901 aa
AA seq
DB search
MEPMVEVFPNNHTTMTAHASQRVSRSGFSQTGYKRLKFSGSVNECGNMAISASMPNDIEQ
KKPKTSPEVIDYCEPFAIPNLLESLDSGKYGSVTKDIEALIARKMQMLHPYYAKYPTLSN
TFLEAKEKPSNGATHLSDNNVIDLEDDNMANYVKAVAPPVVVIDSDEEDDVHQKTFVPVQ
EIVLPRPAGQFLMKDFLDFRVPLGHARKGGAQQEEAIAELEIKKDKGVYVGVEDEDNHQT
DSEDDGLEDMWKEMTMALECSKDVALDPSSDEQLKEGGEYCDHSFVLKDDLGYVCRICGV
IDREIETIFEFQYNKVKRSTRTYMPDSQNAKDKDSTEIFRVKLSEDDQMVTEIFAHPRHT
KQMKPHQVEGFNFLVSNLVGDSPQGCILAHAPGSGKTFMIISFMQSFLGKYPHARPLVVL
PKGILATWKKEFQTWQVEDIPLYDFYTVKADNRSQQLEVLKQWVEHKSILFLGYKQFSAI
VCDNVTSKISASCQEILLKAPSILVLDEGHTPRNENTDVLQSLAKVQTPRKVVLSGTLYQ
NHVKEVFNILNLVQPKFLRLETSRAVVKRIMSRVDIPGIRRPFKAGADAAFYDLVEHTLQ
KDKDFRRKVAVIRDLREMTSTVLHYYKGDFLDELPGLVDFTVVLNLSSRQKHEVSNNVKK
LAMKFKISSVGSAIYLHPKLNSFSDNHATADHLVDEMLEKIDVKDGVKAKFFLDMLSLCE
SAGEKLLVFSQYLLPLKFLERLAVKMKGWSPGREIFMISGESSSDQREWSMERFNNSSDA
KVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKKRVYAYRLVAADS
PEEEDHSTCFKKELISKMWFEWNEYCGYRDFEMETVDVKECDDIFLESSLLGEDVRVLYR
R
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atggagccaatggttgaagtgtttccgaataatcacaccactatgactgctcatgcatcg
caacgtgtttcaagatcagggtttagccaaacgggatataaaagactgaagttttcgggt
agtgtaaatgagtgtggaaacatggccatctctgcaagcatgcctaatgatattgaacag
aagaaaccaaagacttccccagaagttattgattactgcgagccttttgctatccctaac
ttgctggaaagcttagactcgggtaaatatggaagtgttacaaaagatatagaagccctc
attgctcgaaagatgcagatgctgcacccttactatgcaaagtatcccacactttcaaat
acattcttggaagcaaaagagaaacctagtaatggggctactcacttgtcagataataat
gtcattgatttggaggatgacaatatggcaaattatgttaaagctgtagcaccgcctgtt
gtagttattgactcagacgaggaagatgatgtacatcagaagacttttgttcctgttcag
gagattgtcttgccaagaccagctggacaatttctcatgaaggactttttggatttccgt
gttcctcttggtcatgccagaaagggtggagctcagcaagaagaagcaattgctgaactt
gaaatcaagaaagataagggtgtttatgttggtgtagaagatgaagacaatcatcagact
gattctgaagatgatggtctggaagatatgtggaaggagatgacgatggcactagaatgt
tcaaaggatgttgctttagatccttcatcggatgaacaattgaaggaaggaggggaatac
tgtgatcattcttttgtcttaaaggatgatcttggctatgtttgccgcatttgtggtgtt
atagacagagaaattgagactatatttgagttccagtacaataaggtcaaaaggagtacc
cgaacttacatgcccgattctcagaatgccaaagacaaagactcaactgagatattcaga
gttaaactttctgaagatgatcagatggtaactgaaatatttgcgcatccaaggcatacg
aagcaaatgaaacctcatcaagtagagggtttcaattttcttgtcagcaacttggtgggt
gatagtcctcaaggctgcatcttggcccatgctcccggatctgggaagacatttatgata
atcagttttatgcaaagtttcctgggaaagtatccacatgctagaccactggttgttctc
cctaaaggaatcttggctacgtggaaaaaggagttccagacatggcaagtagaggatatt
ccactgtatgatttttacactgtcaaggctgataatcggtctcagcaacttgaggtgctg
aaacagtgggtagagcataagagtatccttttcttgggttataaacaattctcggcaatt
gtttgtgacaatgtaacgagcaagatctctgcctcatgtcaagagatacttcttaaggct
ccttcaattcttgttctggacgaagggcacactccacgaaacgagaacactgacgtgtta
cagtcccttgcaaaggtgcagacacccagaaaagttgtactttcaggaaccctctaccaa
aatcatgtcaaagaggtgttcaatattttgaatcttgtccaaccaaagtttttgcggttg
gaaacctctcgagctgttgtcaagcgcatcatgagtagagtagatataccaggtatcaga
agaccgttcaaagcaggtgctgatgcagctttctatgacttggttgaacacactttacag
aaggacaaagattttaggcggaaagtggccgtcatacgagatttgcgcgagatgaccagc
acagtccttcactattataaaggggacttcttggacgagcttccaggtcttgttgatttc
actgtggtactgaatttaagctccagacagaagcatgaagtttcaaataatgtaaaaaag
ttggcgatgaagttcaagataagttctgttgggagtgccatctatcttcacccaaagctg
aattctttctctgataatcatgctactgctgatcatctggtggatgagatgttagagaaa
atagatgtaaaagatggagtgaaggcaaaattctttctcgatatgcttagcttatgtgag
tcagctggagagaagctgctggttttcagtcagtaccttctacccttgaaatttctagag
agattagcagtgaagatgaagggatggagtcctggaagagaaatctttatgatttcaggc
gaatcaagctctgaccaacgtgaatggtccatggagcgcttcaacaattcttctgatgcc
aaagtcttctttggctccatcaaggcatgtggggagggtatatctttggttggggcatcc
cgcataataattctggacgttcatctgaatccatcggtgacccgccaagcaataggtcgt
gcatttcgaccaggtcaaaagaagagagtttatgcatatcgattggtagctgctgactca
cccgaagaggaagatcacagcacttgcttcaagaaggaattaatttcgaagatgtggttt
gaatggaatgagtattgtggttatcgtgattttgaaatggagacagttgacgtgaaagag
tgtgatgatatcttcttggaaagttcactgttaggagaagatgtaagggttctgtacaga
aggtag
DBGET
integrated database retrieval system
