Carya illinoinensis (pecan): 122311070
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Entry
122311070 CDS
T08745
Name
(RefSeq) polyadenylate-binding protein 8-like
KO
K13126
polyadenylate-binding protein
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03015
mRNA surveillance pathway
cill03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122311070
09123 Folding, sorting and degradation
03018 RNA degradation
122311070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122311070
03041 Spliceosome [BR:
cill03041
]
122311070
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122311070
mRNA cycle factors
Stress granule specific factors
122311070
Spliceosome [BR:
cill03041
]
Complex C
Other components
Complex C specific factors
122311070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
RRM_Nup35
RRM_RdRP1_2
RRM_7
RRM_MARF1
SET_assoc
PABC_AtC3H46
DUF5062
GH97_C
PH_35
Motif
Other DBs
NCBI-GeneID:
122311070
NCBI-ProteinID:
XP_042981364
LinkDB
All DBs
Position
5:complement(1090153..1095682)
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AA seq
647 aa
AA seq
DB search
MAQVQPQPQNAIPGANGAGGANQFVTTSLYVGDLDANVTDSQLYDLFNQLGQVVSVRVCR
DLTTRRSLGYGYVNYSNPQDAARALDVLNFTPFNGRPIRIMYSHRDPSIRKSGAGNIFIK
NLDKAIDHKALQDTFSAFGSILSCKVATDSYGQSKGYGFVQFDTEESAQKAIEQLNGMLL
NDKQVFVGPFLRKQERESAIDKMKFNNVFVKNLSESTTEEDLNNIFGEFGIITSVIVMRD
MDGKSRCFGFVNFENADDAAKAVEALNGKKVDDKEWYVGKAQKKSERENELKLRFEQSMK
EAADKYQGANLYVKNLDDSIGDDKFKELFSQFGTITSCKVMRDPNGISRGSGFVAFSTPE
EASRAMSEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQMRPVAMPPSVAPRLPMYPPG
APGLGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPMPNFFMPMVQQGQQGQRPGG
RRAGAVQQTQQPVPLMQQQMLPRGRVYRYPPGRALPDVPMPGVAGGMFSVPYDMGGMPLR
DASLSQPIPIGALASALANATPEQQRTMLGENLYPLVEQLEPENAAKVTGMLLEMDQTEV
LHLLESPEALKAKVAEAMDVLRNVQQQQAGNAADQLGSLSLNDSLVS
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggcacaggtacaacctcagcctcagaatgcgattccgggagccaacggtgcgggtggg
gccaaccagttcgtgacgacgtcactttatgttggagatcttgacgctaacgtgaccgat
tcgcagctctatgatctgtttaaccagctgggccaggtggtttcggttagggtttgcagg
gacttgaccacccgccgatctctcggttatggctacgtcaattatagcaatcctcaagac
gctgcaagggcattggatgtactgaacttcacccctttcaatggaaggcccattaggatt
atgtattctcatcgtgaccctagcattcgcaaaagtggggctggaaacatatttattaag
aatttggataaggcgattgaccacaaagcgttacaagatacattttctgcatttgggagt
attctttcttgcaaggtagctacagactcctatggccagtcaaaaggctatgggtttgtt
caattcgatactgaggagtctgcccaaaaagctatagagcagttgaatggtatgctgttg
aatgacaagcaagtttttgttggacccttccttcgcaagcaggaaagagagagtgctatt
gacaagatgaaattcaacaatgtctttgttaaaaatctctctgaatcgacaactgaagaa
gatttgaacaatatttttggagaatttggaattatcaccagtgttattgtgatgagggat
atggatgggaaatcaaggtgttttggttttgtcaactttgagaatgcagatgatgctgct
aaggctgttgaggctcttaatgggaagaaagtggatgataaggagtggtatgtcgggaaa
gcccagaagaagtctgaaagggaaaatgaattgaagcttcgatttgaacagagtatgaaa
gaggcagcagataaatatcaaggggcaaatttgtatgttaaaaatttggatgatagcata
ggtgatgataaattcaaggagcttttctctcagtttggtaccattacctcatgcaaggtt
atgcgagacccaaatggaataagtaggggatcaggatttgttgcattctctactcctgaa
gaggcatctagagctatgtcagagatgaatggcaaaatggttgtgagcaaacctctatat
gttgcacttgcacagcgaaaagaagatagaagagctaggttgcaggctcaattttctcaa
atgcggccagttgcaatgccaccatcagttgctcctcgtttgccaatgtacccccctggt
gctccaggtcttggacaacagatattctatggccaaggtccacctgctatcattccttcc
cagcctggatttggatatcagcagcaacttgttcctggtatgaggcctggtggggctccg
atgcccaatttcttcatgccaatggttcagcaggggcagcaggggcagcgtcctggtggc
aggcgtgcaggggctgtgcagcaaacccagcagccagttccactaatgcagcagcagatg
cttccaaggggccgtgtctaccgttacccccctgggcgtgccctgcctgatgttcccatg
cctggtgttgctggaggtatgttttctgttccatatgacatgggtggtatgccgctgcgt
gatgcatcgttgtcccagccaattcctataggggctttggctagtgcccttgcaaatgct
actccagagcagcagagaacaatgctgggtgagaacctctacccacttgtggaacagctg
gagcctgaaaatgcggctaaggttacaggcatgcttttggagatggatcagactgaggtg
ttgcacttgctcgaatcaccggaagctctgaaagcaaaggtggctgaggctatggatgtt
ctgaggaatgttcagcagcagcaagctggcaatgcggctgatcaactgggctcattgtct
ctgaatgacagcctcgtttcatga
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