Carya illinoinensis (pecan): 122311140
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Entry
122311140 CDS
T08745
Name
(RefSeq) cyclic nucleotide-gated ion channel 1-like isoform X1
KO
K05391
cyclic nucleotide gated channel, plant
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
122311140
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cill04040
]
122311140
Ion channels [BR:
cill04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
122311140
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Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
122311140
NCBI-ProteinID:
XP_042981497
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Position
1:13210703..13216154
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AA seq
752 aa
AA seq
DB search
MDFSRNSYLRPLPIRRSSYIPWKINEMMDNFLYPQGEFLDRWNKLFVLSCAISWALDPLF
FYIPMWKLNDQETCLDSDRTLALVVSVLRSVTDAFYAIHIYFQFRTVIVQPSSRVFGTVD
LTVRIAKRYLSTYFTVDILAILPLPQVVVFVLSPSLENATPWVMIEVLKLVIFCQSMPRL
LRIYPLYVEVTRSSGRLATTALGGAAYYFLLCMLSSHVVGAFWYIFGIARQGACWQIMCR
KIGSCGYIDYPSCGNKLDQADFVRQVIQACRIVEPAETKNSTDDFDFDFGIFTTVLKSGV
MESSDFLGKFSYCFWWGFRSLSSIGQNLETSSTYLFEIIFVFLIATYGMILFFLLIDNLQ
KYTQSTTIRRVEEMMVRKTDAEQWMSRRNLPYCLRERIRQYEHYKWLETRGVEEENAIHN
LPKQLRREIKRHLCFDLLMKVPMFAKMDQQLWNLLFDRLKPVVYTQGSYILREGDPVDEM
LFIMRGNLTTITINGGITSFNSTADFCGEELLTWALYAQPSTKFPISTKLVVTETVVDAF
VLMAEDLRTLASQFPKLHIKELQQANNDKRTIISIGTSSDHHLSHLRKWSFILEPCKNDF
FYSQQWRTWVAAGFIQSAWRRYRKRKHERALCDAENRLQYSLANEVGASESFGATMQRPE
GTLNTRVRQLLPPSKPVEPNFNVEGDNTSQTSIGHSPNMVNIVRTEIRAALAEHRMSLLE
DLEKIIMPIMTRLADMEGRMTATEEVARTRGL
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggatttcagtcgaaatagctatttgcgtccccttcccatacgtcggtcgtcttatatt
ccgtggaagatcaatgaaatgatggacaactttttatatccgcagggtgaattccttgac
aggtggaacaaactatttgtgctttcttgtgcgatatcatgggcattggacccactattc
ttttacatcccaatgtggaagttgaatgatcaagagacatgcttagattcggacagaaca
ctggcgcttgttgtttctgttcttcgttcagtcacagatgctttttatgcaattcatata
tacttccaatttcgaactgtgatcgtccaaccttcttcccgagtgtttggaacggttgat
ttgactgtaagaatagcaaaaagatacttgtccacatatttcactgtcgacattctagca
atccttccattaccacaggtggtagttttcgttctctctccttcattagaaaatgcaact
ccatgggtaatgatagaagtgttgaagctcgtaatcttctgccaatctatgccgaggctt
ttgcggatctatccactatatgtagaagtaactagaagctctggcagactggctacgaca
gcattgggtggagctgcctattactttttgctctgcatgctatccagtcatgtggttgga
gcgttttggtacatttttggcattgcacgacagggtgcgtgctggcagataatgtgtagg
aaaattggctcatgtggatatatagattatcccagctgtggaaataaacttgatcaagct
gactttgttcgtcaagtaattcaggcttgccgtattgtcgaaccagctgaaactaaaaac
tcaaccgatgactttgactttgactttggaatatttaccacagttttgaagtctggggtt
atggaatcaagcgactttttagggaaattctcttattgcttctggtggggttttcgcagt
ctaagttctattggtcaaaatctggaaacaagcagcacctaccttttcgagataatcttt
gtttttctcatagccacctatgggatgatcttattcttcttacttattgacaatctgcag
aaatatacgcaatccacaacaataaggagagtagaagaaatgatggtgaggaagactgat
gcagaacaatggatgtcccgacgtaatctcccttactgcttaagggagcggattagacaa
tatgaacattacaaatggctagaaacaagaggtgtggaggaagagaatgccatccataat
cttcctaagcaactcagaagggaaataaagcgccatctttgcttcgatcttcttatgaag
gtgcccatgttcgcaaagatggatcaacaactgtggaatctgctgtttgatcgtctcaag
ccagtagtttacacacaaggcagctacattcttcgtgaaggggatccagtggacgagatg
ctctttatcatgcgaggaaacctaaccactatcactatcaatggtggaataacttctttc
aacagtactgctgatttttgcggtgaagagcttcttacttgggccctatatgcccagccc
tcgaccaaattcccaatttcaacaaaattagtggtgactgaaacagtggttgacgccttc
gttctgatggcagaagacttgaggactcttgcctctcagtttccgaaacttcatatcaag
gagttgcagcaagctaacaatgacaagagaactataatctctattggaactagctctgat
catcatctttctcatttgcgtaaatggtccttcatattggaaccgtgtaaaaatgacttc
ttctactcccaacaatggagaacatgggtggcggccggttttatccaatcagcttggcgc
cgttaccgtaagagaaagcacgagagggctttgtgtgatgcagaaaatagattgcaatat
tctttggcaaatgaagttggggcctctgaaagttttggtgcaactatgcaacgaccagaa
ggcacactcaataccagagtgcggcaactgctgccgccatcaaagcctgttgagccaaat
ttcaatgttgaaggtgacaatacttcacaaacatcaataggtcattctcccaacatggtt
aatattgtgcgcacagagattcgtgcagcacttgcagagcatcgtatgagtttgctagag
gacttggagaagatcattatgcccatcatgactcgactggcggacatggagggtcgtatg
actgctacggaggaggtcgccaggactcgaggcctttag
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