Carya illinoinensis (pecan): 122311370
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Entry
122311370 CDS
T08745
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122311370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122311370
03012 Translation factors [BR:
cill03012
]
122311370
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122311370
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122311370
Translation factors [BR:
cill03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122311370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
Dicer_dimer
NACHT
ATPase
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
122311370
NCBI-ProteinID:
XP_042981850
LinkDB
All DBs
Position
5:45950722..45988019
Genome browser
AA seq
1205 aa
AA seq
DB search
MLSSSLLQALPFPSPQFSSTLLIKALKPSLFPPFLSMKDRPPSSYGAVYVPPHHRLRSVI
TSPNHTSAALIDSKLREAQSAVLNPRAGTLPHFQAQNNQQQEQLHKGNSQYNSACDDRVS
EEDSDREFESFSQPGASHSNNVDEWRQKFTMLLHDKEKQELVSREKKDRHDFEHISALAS
RMGLYSHLYAKVVVFSKVPLPNYRFDLDDKRPQREVALPLGLLRRVDSYLGEYLSQKSKT
RENFPDLSFSTLSSGCSIATDEGLFEQPEPLAASKAVMEKILWRRSLLLRDQQQAWQESS
EGRKMLEFRQSLPAYKEKDALLTAISQNQVIIVSGETGCGKTTQIPQFILESEIESIRGA
ACSIICTQPRRISAMSVSERVATEMGQKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRR
LLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLDADLFSSYF
VGAQIMHIPGFTYPVRTHFLENILEITGYRLTPYNQIDDYGQEKMWKMGKQAPRKRKSQI
ASVVEDALKAADFKEYSHQTRESLSCWSPDCIGFNLIEYILCNICENEKPGAILVFMTGW
DDISSLRDKMQAHPLLGDPSRVLLLACHGSMASSEQRLIFDEPDNGVRKIVLATNIAETS
ITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECYHLYPR
CVYDAFAEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQNAIEYLKII
GALDEKENLTVLGRYLTMLPMEPKLGKMLILGAIFNCLDPVLTIVAGLCVRDPFLTPFDK
KDLAEAAKSQFSRDYSDHLALVRAYDGWKDAEIDNSGYEYCWRNFLSAQSMKAIDSLRKE
FFSLLKDTGLVDGNTASYNTWSHDDYLIRAVICYGLYPGICSVVNNEKSFSLKTMEDGQV
LLYSNSVNARESKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFGGGISRGDTAGHFK
MLGGYLEFFMNPSIADMYLSLREELDELIQNKLLYPRMDIHTHHELLSAVRLLVSEDGSD
GRFVFGRQVLKPSKTSVIATKPTLVSRIESGPGGDNSKSQLQTLITRAGYAAPTYKTKQL
KNNQFRATVEFNGMQIMGQPCNNKKSAEKDAAAEALQWLMGGNQAGNEYINHMSMLLKKS
KKDHG
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgctctcctcttctctcctccaagctcttcctttcccttccccacaattttcttccact
ttgctgatcaaagcccttaaaccctcactctttcctccattcctctcaatgaaggaccgg
cctccatcctcctacggcgccgtttacgtccctccccaccaccgcttacgctccgtcatc
acttccccgaatcacacctccgcggctctcatagactccaagctccgcgaagcccaaagc
gcggttctaaaccctagagccggtactctgcctcactttcaagcccagaataatcagcag
caggaacagctccacaaggggaattctcagtacaactcggcgtgcgatgatagggtctcc
gaggaagactcagatcgcgagttcgagtctttttcacagccgggtgcttcccactctaat
aacgttgatgagtggagacaaaagtttacaatgcttttacatgacaaggagaagcaagag
ttggtctcaagggagaaaaaggatagacatgattttgaacatatatcagctttggcaagc
agaatggggctttacagccatctgtatgcaaaagttgttgtctttagtaaggtcccgctg
ccgaactacagatttgatctggatgacaaacgtccacagagggaggtggccttgcctctt
gggttgctgagaagagttgattcctacttaggagaatacctctctcaaaagtctaagact
agagaaaactttccagatctatcattttcgacgttgagcagtggctgtagtattgccact
gatgaagggctttttgagcaacctgagccactggcagcaagtaaggctgttatggagaaa
attctttggcggagaagtttactactgcgggatcagcaacaagcttggcaggaatcttct
gaaggtagaaaaatgctggaatttcgtcagagtctccctgcttataaagaaaaggatgca
ttgctgacagctatttcacaaaatcaggttataattgtttcaggtgagactggctgtggc
aagaccacgcaaattccccaatttattttagagtcagagatagaatctattcgtggagct
gcttgtagcattatatgtacacagccacggcgaatatctgctatgtctgtttctgaaaga
gttgctacagagatggggcagaaattgggtgaatctgtgggatataaagttcggttggaa
ggtatgaaagggagggacacccaccttctcttttgcaccactggcattttgttgagaaga
ttgcttgttgatagaaacttgaaaggtgtaactcatgttattgtggatgaaattcatgaa
cgtggaatgaatgaagattttctgcttattgtcctaaaagaactccttcctcgtcgacca
gaacttaggctaattctgatgagtgcaacacttgatgctgatcttttctcgtcctacttt
gttggggcacagataatgcacatcccaggttttacatatcctgttcgaactcatttcctg
gagaatattttggaaataacgggttacagattgaccccttacaaccaaattgacgattat
ggtcaagaaaagatgtggaaaatgggcaaacaagccccaagaaagaggaagagccaaata
gcttccgtggttgaggatgctctcaaagcagccgattttaaggagtacagccaccagact
cgggaatctttgtcatgttggagtcctgattgtattgggtttaatctaatagagtatatt
ctatgcaacatatgtgaaaatgagaagcccggtgctatcctagtttttatgactggctgg
gatgacataagttctctgagagataagatgcaagctcatccgcttttaggagatccgagt
cgggttttattgctagcatgccatgggtctatggccagttcagagcagaggctaatattt
gatgagcctgacaatggagtgaggaaaatagtgcttgctactaatattgctgagacaagt
attactattaacgacgttgtgtttgttattgactgtggaaaagctaaagagacgtcttat
gacgcactgaacaacactccttgtttgcttccttcctggatttccaaggtttctgctcaa
caaagaagaggaagagctggtcgtgttcaacctggagagtgttaccacctctatcctaga
tgtgtctatgacgcttttgcagagtatcaattgccagaaattttaaggacacctttgcag
tctctttgtctgcaaataaaaagtttgaaacttggaagcatctctgagtttctgtctagg
gctttacaatcaccagaattactagcggttcaaaatgctatcgagtatttaaaaattatt
ggtgccctggatgagaaagaaaatctgacagtcttggggcgctatttgaccatgcttcca
atggagccaaaacttggcaagatgctcatcttaggtgctatcttcaattgcctggatcca
gtattgactattgttgctggcctttgtgtcagagatccctttctaacaccatttgataaa
aaggatcttgcagaggctgcaaaatctcagttttcccgagattacagtgaccatcttgct
cttgttcgggcctatgacggctggaaagatgctgaaatagataactctggatatgaatac
tgctggagaaattttctttcagcgcaatcaatgaaagctattgattctcttaggaaggag
tttttctctttgctcaaggatactggcttggttgatggcaacactgcctcctacaataca
tggagtcatgatgattatctcatccgggcagtcatttgctatggactgtatcctggaatt
tgctctgttgtgaacaatgaaaagtcattttcattgaaaactatggaggatggccaagtg
cttctgtattcgaactcagtcaatgctcgggaatctaaaattccttatccatggctagtt
ttcaacgagaagataaaagtgaattctgttttcctccgtgactcaacagctgtttctgat
tcagtgcttctcctatttggcggaggcatctcaagaggggacactgctggacactttaaa
atgttgggtggatatcttgaattcttcatgaatccttctatagcagacatgtatctaagt
ttaagggaagaacttgatgagctgattcagaacaaactactgtatcccaggatggacata
cacactcatcatgagctcctatcagctgtgcggttgctggtttcagaggacggatctgat
ggcaggtttgtatttggccgccaggtcctgaagccctcaaagacatctgttatcgcaaca
aagcctaccttagtttcaagaattgaaagtggacctgggggtgataattctaagagtcag
ctacaaacattgatcaccagggctggatatgctgcgcccacttacaaaactaagcaactg
aagaacaaccagttccgtgccaccgtggagtttaatggaatgcaaattatgggtcagcct
tgtaacaacaagaaaagtgcggagaaagatgctgcggctgaggctcttcagtggcttatg
ggtggaaaccaagcgggcaatgagtatataaatcatatgtcaatgttgctgaagaaaagc
aagaaggatcatggttaa
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integrated database retrieval system
