Carya illinoinensis (pecan): 122311457
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Entry
122311457 CDS
T08745
Name
(RefSeq) uncharacterized protein LOC122311457 isoform X1
KO
K24155
rabconnectin-3a
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
122311457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cill04131
]
122311457
Membrane trafficking [BR:
cill04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
122311457
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
122311457
RAVE complex
122311457
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_Prp19
Beta-prop_EML
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_C
ANAPC4_WD40
WD40_CDC20-Fz
Beta-prop_IFT140_1st
EIF3I
Motif
Other DBs
NCBI-GeneID:
122311457
NCBI-ProteinID:
XP_042981946
LinkDB
All DBs
Position
1:complement(13947082..13968048)
Genome browser
AA seq
2541 aa
AA seq
DB search
MTDPIATVDPIPHLPLPLLPSDPIPPAPTRSSPPGSTIDFLPDFSGYSWVAYAASSLLVI
SHFPSPLSPDEVLIGPIFRQVFELSSAVTAVSWSPVSPSMGELAAAVENCVCLFQHDSAS
SAGSFCWSQNAVLVQCTKVEAVEWTGSGNGIIAGGIEVVLWRNNSKSWEIAWKLKAECPQ
TLVSATWSVEGPFATAAYHSDPQIEGSMVDAVSKCVFVCWSTGKSDYTKAELPHPLSVSM
IQWRPLTGRQLNRDGKHSRRQLLLTCCLDGTVRLWCEMDNGRVRKTGKDTIDRETARRSF
CVVAVIEINQALNGTLGMDVYVLWTTEIWGLLKTGDGVDQILSTEGLEHDKAGRCEWLVG
FGPEKLVYFWAIHCLDDISPMRFPRVTLWRRQELQGLEEGECCGTSFSNSKNRLLLNKFV
MLRNRLSGPPIMCSLIHLLPCDSLVWSLLHTKASSNIEDTSPSKSRTDGFLSCSASGILN
LGGHAGKILQVAAHPDSCEVELAVSLDSNGLLLFWSLTTISNGILGCPSLLPTWKLCGKL
VIQDSFPKYTCLRWAPSVLNDELFLLMGHIGGIDCFIVTIHHNKAENIECHYLFTIPFTG
HGPYEDGPTNIFSIPLSSTCDKTFKYNKFMLLGIWMKEFRALSWEMTFHCSDLSASYCEC
NFHTKDGSEGSTWMFEGAFSGKRYRLGVNPCSSHLPDPHYHDQVTSFAVVCPGSLTHNQQ
KLDSINDMYGSYPAYIMATGCSDGSLKLWRSNAGKASTPHVPWELVGMFVAHQGPVSSIC
LTDCGQKIATVCVEHHLNTVSTLHIWHSVRLTCAGTFMLEDTLFLDKGVIALNWLALGNG
QLLLGVCMQNELRVYATKRFGSHNLLGSEKYSKMDIWVCIAFTHTLPPIHDFHWGPKAAT
VVIHDNYFRVSCQWLFHILKEHKAKCHLNYIEESFPHCDDRANEEILSAVFTDCDIGNFK
QSCESQPSVEMHKKNDFPASSLFIARDRLKCDSGSKIGLWSLPEVVERFSGSLPSYHPET
LLMNIFSGNWKRAYMAVRHLVECLTSNYATKMKNISTKTCCIIPEILLSDYFDGSLFRNS
TYKGFQWGGDLTTTSSQFQSSMFQFASDSESFASNNIFPSSSKKSELSGFVETLENLHQL
AAITNTEKNQIVAITDLLSELSTAQTSAYESLDEPGRRFWVALRFEQLHFFRMTGRPASM
KELIVDSRLIVWAYHSDSQEILFGSFLPNEPTWQEMRAIGVGYWFTNTTQLRAWMEKLAR
SQYLKNKDPKDCALLYIALNRLQVLAGLFKISKDEKDKPLVAFLARNFQEEKNKAAALKN
AYVLMGRHQLELAIAFFLLGGDTYSALNVCSKNLGDEQLAIVISQLVEERGGPLQHHLKA
KFLLPSSIEKRDYWLASLLEWEMGNYLQSFFSMLGFQINTMAEKSVFSSKHVAFLEPNIG
LYCQMLASKNSLRNAVGEQNTAVLSRWATLMTSTALKRCGLPLEALECLSSSMSVIGSRD
DGRWSDDVSSFEILNGILKPSPQDSSNWLSGDAAFQLESHDKLDLALPYFSKLLIEHPSW
PGNIVESVGASACSKEYEIHEYEELLENFRHKFFRGLSQFDQRFSLSPAHVVSLMFVSLC
NHGLLFMGYDILDGSASQDQSQDKHYKVDSFILYPLLRMPLLKATNEISLLFSRFITACS
ITCPQTKLRNIDHDMSANNRSKWLDTWGYFFQGLMPSLLSLRAALRFISSSITKDLMMEP
LMILDLFEFYVHFASAWLQKNSKVLLLMVQPLLITLTNGHAPYEADVTNMRKLLPQIEEL
VAHNISMDDRGKGLQASNCVQNKLARDMIHSMPEEERWQIIGTCLWQHMSSFVKQKFEKL
DDKCLPGVSIRKLSSYASYYTNLEYDGNNITEEIRLVSLSLAELLKTTLTHLSSYHVKQL
ASFIQQKVENGLQVMTLLWLKESSQLQSRDLCEGTVNIEVMKSKDESSISELLWDICADS
KIIYEGFKHGKVNLSHSFDQKLSNAWSDKYIGLEVHEREGSNTYDGMLRNSSASSESESP
AGGLIHSGPAFPSSWQKEATLTKEVISFKNPKEVYKRSGELLEALCVNSIDQRQAVLASN
RKGILFFNWEDGSTFTDQSDYIWSIADWPQNGWAGSESTPVPTCVSPGVGLGSERGAHLG
LGGATVGVGSLVRPGRDLTGGGAFGIPGYAGMGASGLGWEIQQDFEEFVDAPPTVENIST
RAFSGHPSRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALRFDYC
GHRFATAALDGTVCTWQLEVGGRSNICPTESSLCFNNHASDVTYVSGGSVIAAAGNSSNG
VNVVIWDTLAPPSTSRASIICHEGGARSLAVFDNDIGSGSISPLIVTGGKGGDVGLHDFR
YIATGKSKRNRHADIGESIGSSSSSDIQTGITKNVGDQNRNGMLWYIPKAHSGSITKICT
IPNTSLFLTGSKDGDVKLWDAKRAKLVYHWSKLHERHTFLQPSSRGFGGLVRAAVTDIQV
LSHGFLTCGGDGIVKLVELKQ
NT seq
7626 nt
NT seq
+upstream
nt +downstream
nt
atgacagacccaatagccaccgttgatcccatcccccacctccccctccccctcctccca
tccgatccaatccctccggctccgacccgctcctctccacccggatccaccatcgatttc
ctcccggacttctccggctactcatgggtcgcctacgctgcctcctctctcctagtcatc
tcccacttcccctcccctctctcacccgacgaagttctcattggcccaatctttcgccag
gtattcgagctctcctccgccgtcaccgctgtgtcttggtctccggtgtcgccatcgatg
ggagagctagccgctgcagtggagaactgtgtctgcctcttccagcatgactcggcgagt
tccgcaggttctttttgttggagtcagaatgcagtgcttgtacaatgtacaaaggtggag
gcagtcgaatggacgggctctgggaacgggataattgctggtggaattgaggtggtttta
tggagaaacaacagcaagtcctgggaaatagcttggaagcttaaagcagagtgcccccaa
actctggtctctgcaacgtggtcagttgagggacctttcgctacagcagcttatcatagt
gaccctcagattgaaggatcaatggttgatgcggttagcaaatgtgtgttcgtatgttgg
agtactggaaaatctgattacacaaaagctgagctacctcatcctttatctgtgtcaatg
atccagtggaggccattgacaggaagacaattgaatagagatggaaaacattcacggaga
caactgctgctaacatgctgcttagatggaacagtaaggttatggtgtgagatggataat
ggaagggtcagaaaaactggaaaggacaccattgatcgcgaaactgccaggcgatctttt
tgtgtagttgctgtaattgagattaaccaggccctgaatggaactctgggcatggatgta
tatgtgttgtggaccacagaaatttggggccttttaaaaactggtgatggagtggaccaa
attttgtccactgagggattggagcatgacaaggcaggcagatgtgagtggttagttgga
tttggtccagaaaagctggtttatttttgggctatccactgtcttgatgacatctcccca
atgcggtttccccgagttacattatggaggagacaagaattgcagggcctagaagaggga
gaatgttgtgggactagtttttcaaattctaaaaacaggttacttcttaataaatttgtt
atgttgaggaaccgcttgtccggtccaccaattatgtgttctttgattcatttattacct
tgtgattctttagtttggtcactgttacataccaaggcatctagtaatatagaggatact
tctcctagtaaatccaggacagatggctttttatcatgttctgccagtggaattctgaac
ttaggtggtcatgctggaaagatcttacaagttgctgcacatcctgatagctgtgaagtt
gaactggccgtttctctagattctaatggattgcttcttttttggtcacttactacaatt
tccaacggcattctgggttgtccatcattgcttccaacatggaagctttgtggaaaactt
gtgattcaagattcatttcccaaatatacatgcttgaggtgggcaccttcagtactgaat
gatgaactgtttcttcttatgggacacattggaggaattgattgctttatagttacaatc
caccacaacaaagcagaaaatatagaatgtcactacttattcaccatacctttcactggc
catggtccatatgaggatggtcccacaaatatcttttcaattccattgtcttctacttgt
gataagaccttcaagtacaataaatttatgcttttggggatatggatgaaagagtttcgg
gctctatcatgggaaatgacctttcattgttctgatctatccgcaagctactgtgaatgt
aattttcacaccaaagatggctcagaaggcagcacatggatgtttgaaggtgctttttct
ggtaaaagataccgtcttggcgtaaatccttgctcatcacatttaccagatcctcactac
catgatcaggttacaagttttgctgtggtctgtccaggtagtctgactcataaccaacaa
aagctggattcaatcaatgatatgtatggcagttatcctgcatatatcatggccactggc
tgctctgatggaagtttgaaactgtggagaagtaacgctggtaaggcctcaacccctcat
gtgccatgggagcttgttggtatgtttgttgcacatcaagggcctgttagttccatatgc
ttgactgattgtggtcagaagattgcaaccgtctgtgtggaacatcatctgaatactgtc
agcacccttcatatatggcactctgtacgccttacatgtgcagggacttttatgttagaa
gatacattattccttgataaaggcgtcattgctttaaattggttagctttaggaaatggt
cagttattacttggagtatgcatgcagaatgagttgcgagtatatgcaacaaagcggttt
ggaagtcacaatttgttgggctctgaaaaatattcgaaaatggacatatgggtttgcatt
gcattcactcacactcttcctcccattcatgactttcactggggacccaaagctgcaact
gtggttattcatgataattacttccgtgtatcttgtcaatggctgttccacattcttaaa
gaacataaggctaagtgccatctgaattatattgaggaaagtttccctcattgtgatgat
cgagcaaatgaggaaattctttctgcagttttcactgattgtgacattgggaattttaaa
caatcatgtgagtctcagccatctgtagagatgcataagaagaatgatttccctgccagc
agtttgttcatagcaagggatcgattgaaatgtgattcaggttcgaagattggtttatgg
agcttgccagaagtagtggagaggtttagcggatctttacctagttatcaccctgaaact
ctacttatgaatatattttcagggaattggaaacgtgcatatatggctgtgaggcatctt
gttgaatgtcttacttctaattatgctactaagatgaaaaatatctccacaaagacctgc
tgcataatcccagagatccttttgtcggattattttgatggaagtcttttcagaaattca
acttataaaggatttcaatggggtggagatttgacgacaacatcatctcaatttcagagc
agcatgttccaatttgcgtccgattctgaatcttttgcttccaataatatcttcccttcc
tcttccaaaaaatctgaacttagtggttttgttgagactcttgagaacttgcatcagcta
gcagctataaccaacacagagaagaatcaaattgttgcaattacagatcttctcagtgaa
cttagtactgcacagacttctgcctatgaaagtcttgatgaacctgggcgaaggttttgg
gtggcgttgaggtttgagcaattacattttttccggatgactggtagaccggcatctatg
aaagagttgattgttgactctaggttgattgtatgggcataccactctgattcccaagaa
attttatttggttcttttctacctaatgaaccaacttggcaagaaatgcgggctattgga
gttggatattggtttactaatacaacacaattgcgtgcatggatggagaaactggcaaga
tcacaatatcttaaaaacaaagatcccaaggattgtgctctgttatatatagctttgaat
agacttcaagtgttggctggtctttttaaaatcagcaaggacgagaaggataagcctttg
gtggcttttcttgcacggaattttcaggaggaaaaaaacaaggcagctgctttgaagaat
gcttatgttttaatggggagacatcagctagagctggccattgctttctttctgcttggg
ggtgatacctattcagctctcaatgtttgctcaaagaaccttggggatgaacagcttgca
atagtaatttctcaacttgttgaggagcgtggtggaccattacagcatcatctaaaagca
aagtttttacttccatcaagcattgagaaaagagactactggcttgccagccttctggag
tgggaaatggggaattacttgcaatcattttttagcatgcttggtttccagatcaatacc
atggctgaaaagtctgtgttttcgtccaagcatgttgcgttcttggagccaaatattggt
ctttattgccaaatgctagcctccaaaaatagcttgaggaatgcagtaggggagcaaaat
acagcagttctgagtaggtgggcaactttgatgacatctactgccttaaaaagatgtggg
cttcctcttgaagctttggagtgtctttcatcttccatgagtgtcattgggagtagagat
gatgggaggtggtcagatgatgtcagcagttttgaaattctaaacgggattctaaagcct
tctccacaagattcctctaactggctttcaggtgatgcagcttttcaactggagtcccat
gataaattagatttggcacttccgtacttctcaaaattgctgatagagcatccaagttgg
ccaggcaacattgtagaatctgttggagctagtgcatgctcaaaggagtatgagattcat
gaatatgaggaattacttgaaaacttccgacataagttctttagagggctctcacagttt
gatcagaggttttccttgagtcctgcccatgtagtcagcttgatgtttgtctcactatgt
aatcatgggctcttatttatgggatacgatatattggatggttctgcttctcaagatcag
tcacaagataagcactataaagttgacagtttcatactatatcctcttctgcgtatgcca
ctgttgaaggctactaatgaaatttcccttttattttcacggtttattactgcctgcagt
ataacctgccctcaaaccaagttgcgtaatattgaccatgacatgtctgctaacaataga
tccaagtggttagatacttgggggtacttctttcaaggccttatgccatcattattgagt
ttaagagctgctttacgatttatttccagctccatcactaaagatctcatgatggaaccc
cttatgattcttgatttatttgaattttatgtacattttgcatctgcttggcttcaaaaa
aattcaaaagttctccttctgatggtgcaaccgctcttgatcacgttaacgaacgggcat
gctccatatgaagctgatgtaacaaatatgaggaaactccttccccagattgaagagtta
gtagctcataatatatccatggatgaccgaggaaaaggccttcaagcttcaaattgtgtg
caaaataaacttgctagagatatgatacattcaatgccagaagaagaaagatggcaaatt
atcggcacttgtttgtggcaacacatgtccagcttcgtgaaacagaaatttgagaaactt
gacgataaatgtttgcctggtgtttccatcagaaaactttcttcctatgcatcttattac
acaaatttggaatatgatggcaacaatataacagaagagatcaggttggtctcgttgagc
ttggcagagttattgaagaccacacttacacatctttcttcttatcatgttaaacaactt
gcatcatttatacaacagaaagtagagaatggattgcaggtaatgactcttctatggtta
aaagaatctagtcaacttcaatccagagacctctgtgagggtactgtaaatattgaggtc
atgaaaagcaaagatgaatcatcaatttctgaactactatgggatatctgtgccgattct
aaaataatatatgaaggctttaaacatggaaaagtaaatttgtcacatagttttgatcag
aaactctctaacgcatggagtgataaatatattggtctggaagtacatgaaagagaggga
tctaatacatatgatggcatgcttcggaatagttctgccagtagtgaatcggaatcacct
gctgggggtctgattcatagtggccctgcttttccaagttcctggcaaaaagaggcaact
cttacaaaggaggttataagtttcaaaaaccctaaagaagtgtataagagaagtggggag
cttttggaggcattgtgtgtcaactctattgatcaaaggcaagctgtgcttgcaagcaat
cggaagggcatactgttctttaattgggaagatggttcgactttcactgatcagtcagac
tatatctggtcaatagctgattggccacagaatgggtgggctggttctgaatcgacccca
gttccgacatgtgtctctcctggtgttggtctggggagtgaaagaggtgcacaccttggg
ttgggtggagcaactgttggtgtgggctctctggttaggcccggcagggacttgacaggt
ggtggagcatttggaataccgggttatgctggtatgggagcctctggcttaggttgggag
attcaacaagactttgaggagtttgttgatgcaccgcctactgttgaaaatataagcaca
agggctttctcaggtcacccctctaggccattcttcttggtgggttctagcaatacacac
atttacttatgggagtttggtaaagacaaagctaccgcaacttatggagtgctgcctgct
gcaaatgtccctccgccatatgctcttgcatcaatatcagctttgcgatttgactactgt
ggacacagatttgctactgcagccttggatggaactgtatgcacatggcagctggaggtt
ggaggaaggagtaacatttgtccaacagaatcatctctctgctttaataaccatgcatcg
gatgttacttatgtttctggtggatcagtcattgctgcagctggaaatagttccaatggt
gttaatgtggttatatgggatacattggctccaccttcaacctctcgagcttctattata
tgtcatgaaggtggagcccgctcccttgctgtgtttgataatgatataggaagtggttcc
atttctcctcttattgtgactggcggcaaaggtggtgatgttggactccatgacttccgg
tacattgctaccggtaagagtaagcggaacaggcatgctgatattggtgaaagcattggc
tcatcttcaagttctgacatccagacagggattactaaaaatgttggggaccagaatcga
aatgggatgctttggtatataccaaaggctcactcagggagtatcaccaaaatatgtacc
atcccaaatactagtttgttcttgactgggagcaaagatggagatgttaaactttgggat
gccaaaagggcgaagttagtatatcactggtcaaaattgcatgaaagacatacctttttg
caaccaagctctcgaggctttggtggacttgttcgggctgctgtaacggacatacaagtt
ttgtcacacggttttcttacatgcggtggagatggcattgtaaagctggtagagctcaaa
cagtag
DBGET
integrated database retrieval system
