Carya illinoinensis (pecan): 122311490
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Entry
122311490 CDS
T08745
Name
(RefSeq) ATP-dependent DNA helicase Q-like 4A
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03440
Homologous recombination
cill03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122311490
03460 Fanconi anemia pathway
122311490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cill03032
]
122311490
03400 DNA repair and recombination proteins [BR:
cill03400
]
122311490
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
122311490
DNA replication proteins [BR:
cill03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
122311490
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
122311490
Bloom's syndrome complex (BTR)
122311490
FA (Fanconi anemia) pathway
122311490
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
RecQ_Zn_bind
HRDC
ResIII
HHH
Lipoprotein_20
Motif
Other DBs
NCBI-GeneID:
122311490
NCBI-ProteinID:
XP_042982000
LinkDB
All DBs
Position
5:complement(5699783..5712303)
Genome browser
AA seq
1225 aa
AA seq
DB search
MTAEMCISESNPGQGFKYDDKLPKVNWSQHANAHENFSCQNKFLSSNFLFSLSSQKPCSE
GEMGTRSMACQSQNIRKLQSAQVEKAWHVLSNLQISCRNYIKPGKTVKANNLGNSMSLSI
GKRSISQSSFGIDRSSEHMQTHKNFSQTNGKVNESASCMGNHFPSGNVRAVEAGKSLVGQ
SQTRASTVDHSRSQFMDRSFGSHTVHIGQVKDSAAEILAGDVDDDDLLENIDVDQIVEQY
QSTCTPQPSISKLPPITPTLDEDNFMRQDESGLPPELCSNCSHGLKLGLCPEAATHLQEV
KDMLIVISNELIDNVNELSPGQIEKLRQDRLQLNKQIQQLERYLRANLVDAERQRSHYSA
STAAAVSFQYGTPQSTTIRAPMKFDAAVNLPNEVGGYERWNSPLVSFSSMDSFGVSSGPI
EREPYIPKYVEVNYIEGSNDKKWSSVNFPWTKKLEANNKKVFGNHSFRPNQREVINATMS
GYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANM
EWTEQQEILRELSSDHFKYRLLYVTPEKIAKSDVLLRHLESLHARELLARIVIDEAHCVS
QWGHDFRPDYQGLGILKQKFQNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPN
LLYSVIPKTKKCIDDIDKFIKDNHFDECGIIYCLSRMDCEKVAEKLQECGHKAAFYHGSM
DPTQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRD
GQRSSCVLYYSYSDYIRVKHMISQGGIEQSPFPSGSNRVNIANSGRILETNTENLLRMVS
YCENDVDCRRLLQLIHFGEKFDSANCKKTCDNCLKIKSFIEKDVTDVTKQLVELVKSTRQ
QFSSSHILEVYRGSLSQFVKKHRHETLSLHGAGKHLAKGEASRILRHLVTEDFLVEDVKK
SDIYGSVSSVLKVNEYKAKNLFLGGKTIILRFPSPVKASKLSKSEVAPAKGSLISGKLSP
QIDSPAQPQPEVDLNLSAKLYSALRMLRTILLKEAGEGFMAHHIFGNATLQHISKRIPRT
KEELLEINGIGKGKIGKYGDRLLQTIESTLNEYYRTDKNNSSSNDSNDSIKRRRDTNRDR
DLNAEDDDFTKSTGRSKKRVAKGQNKTAELSNYMEPVVYDQCIDDDDVEFYDCAFEINGS
GIKADENDGGRVLPSWSAPGNWKDC
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgactgcagaaatgtgtataagtgaaagcaatcccggtcaagggttcaaatacgatgat
aaacttccgaaagttaattggtcacaacatgctaatgcacacgagaatttctcatgccaa
aataagttcttgagttcaaatttcctcttctcattatcatcacaaaaaccttgttctgaa
ggagaaatgggtacacggtcaatggcctgccaaagtcaaaatattcgaaaattgcagagt
gcgcaagttgaaaaggcttggcatgttctttccaatcttcagatttcttgcaggaactac
ataaaacctgggaaaactgtaaaagctaataatcttggtaatagcatgtctcttagcatt
ggaaaaagatctatatcacaaagctcatttggcattgataggagctcagagcatatgcaa
acccataaaaatttcagtcaaactaatggcaaagtcaatgaatctgcaagctgcatgggt
aatcattttccatcaggtaacgttagagccgtggaagccggaaagagtctcgtgggccaa
agccagactagagcatcgacagtcgaccattctcgttctcagtttatggatagatcattt
ggcagtcatactgttcatattggccaagtaaaagactctgcagcagaaattttggctggc
gatgtggatgatgatgacctacttgagaatattgatgtggaccaaatagtagaacagtat
caatctacttgcactccacaaccatcaatttctaagctgccacccattactccaacttta
gatgaagacaattttatgagacaagatgagagtggtttgccaccagaattgtgctcaaac
tgcagtcatggtcttaagctaggactgtgccccgaagctgctactcatttgcaggaagta
aaggacatgctaattgttatatcaaatgaattgattgacaatgttaatgaactcagcccg
gggcagattgagaagcttcgccaagataggttacagctgaataagcaaatccagcagctt
gagaggtatcttcgtgccaatttagtcgatgcggaaaggcaaagatcgcattattctgca
tccacagcagctgctgtatcttttcaatatggaacacctcaatcaactacaattagagct
ccaatgaaatttgatgctgcagttaatctacctaatgaggtgggagggtatgaaaggtgg
aattctccattggtttcattctcttccatggatagctttggagtttcttcaggccccata
gagagggaaccatacattcccaagtatgttgaagttaactatattgaaggttctaatgac
aaaaagtggagtagtgtgaatttcccgtggacaaaaaagctggaggccaataataagaaa
gtcttcggaaatcactcatttcgccccaaccaaagagaggttattaatgctacaatgagt
ggatatgatgtttttgttttaatgccaactggagggggaaagagtctgacatatcagctc
cctgctcttatttgtccaggtataacattggttatctctccccttgtgtcacttatccaa
gatcagataatgcatctattacaggcaaacatacctgctgcctacttaagtgccaacatg
gagtggacagaacaacaagagatcctcagagaactaagttctgatcatttcaaatacagg
ctgttatatgtcacaccggagaaaattgctaagagtgatgttcttttgcggcacctggag
agtttacatgctcgtgagttgcttgccaggattgttattgatgaagctcattgtgtgagc
cagtgggggcatgattttaggccagattatcagggtctgggaatcttgaaacagaagttc
caaaatactccggtgctagctttaacagctactgcaacagccagtgtaaaagaagatgtt
gtgcaagctctaggtctcgtcaactgcattgttttccggcaaagttttaatcggccaaat
ttgttgtattccgttattcccaagactaagaagtgcattgatgatatcgacaaattcatt
aaagacaaccacttcgatgaatgtggaataatttattgtctttcgagaatggactgtgaa
aaggtggcagaaaagttacaggaatgtggacataaagcggcattttaccatggcagcatg
gatcctactcagcgtgccttcgtccaaaagcagtggagcaaagatgaaatcaatataatt
tgtgctacagtggcatttggaatgggtatcaacaaaccagatgtccgatttgtaattcat
cactctctcccaaaatctattgaaggctaccatcaggaatgtggccgagctggtagagat
ggtcagcgttcatcctgtgtgctgtattacagttatagtgactatatacgggtcaagcat
atgattagtcagggaggaattgagcaaagtccatttccatctggatctaatcgtgtcaat
attgctaattcagggaggatactggaaacaaatacagaaaatcttttgcgcatggtcagt
tattgtgaaaatgatgttgattgtcgacgtcttctacagctcattcattttggagaaaag
tttgattctgcaaactgcaaaaaaacatgtgacaattgtttgaagattaagagttttatt
gagaaggatgtcactgacgtcacaaagcaattggttgaactggtgaagtcaacacgacag
cagttctcatcatctcatattttggaagtatacaggggctccttaagtcaatttgtcaag
aaacacagacatgagactttgagcctgcatggagccgggaaacatctagcaaagggtgaa
gcttcccgtatattgcgtcatcttgttaccgaggattttcttgtggaagatgtcaagaaa
agtgacatctatggatctgtatcatcagtgttgaaggtgaacgagtacaaagccaaaaat
cttttcctgggtgggaagacaatcatattaagattcccgtcccctgtaaaagcatctaaa
ctgagcaaatctgaagtggctccagcaaaaggctcattgatatctgggaagctaagtcct
caaatcgatagtcctgcccagcctcaacctgaagtagacttgaatctctctgccaaacta
tactcagctcttagaatgctccgaactattcttctcaaagaagctggtgaggggttcatg
gcacaccacatatttggtaatgctacgctgcagcatatcagcaaaaggattcccagaaca
aaggaagaactccttgagatcaatggcattggcaagggcaagataggcaagtatggggac
cgactactacaaaccattgagtctaccctcaacgaatactacaggacagataaaaataac
agcagtagcaatgacagtaatgattcgataaagagaagaagggatacaaatagagaccga
gatttaaacgctgaagatgatgacttcaccaagagtactggtagatcaaagaaaagggta
gcaaaagggcagaacaaaactgctgagctttctaattatatggagccagttgtttacgac
caatgcatagatgatgatgatgtagaattttatgattgtgcttttgaaatcaatggctca
ggtataaaggctgatgagaatgatggtggaagagtgcttccatcatggtcagctcctgga
aactggaaagattgttga
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integrated database retrieval system
