Carya illinoinensis (pecan): 122311878
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Entry
122311878 CDS
T08745
Name
(RefSeq) RNA-binding protein 39-like isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122311878
Spliceosome [BR:
cill03041
]
Common components
Common spliceosomal components
General mRNP proteins
122311878
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_7
Motif
Other DBs
NCBI-GeneID:
122311878
NCBI-ProteinID:
XP_042982572
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Position
5:complement(9452778..9462485)
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AA seq
606 aa
AA seq
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MDFDAYDYLEKTVENIESQKDREDAVNGSGEIEKSREKDRSRRSKHRSDERDDYVERRSK
RSRSEDDSHDRDLHRERGSSRQRSRSRDGERDRHRSVREHKDKERDRDRYKDREERNGKE
REKDRYREPDHDRGKDKRERVRESESERERERERERSHRSRSRSDKHQIEHDERERSHDR
EYKEREMERELRERDRENRRYKEKKEEGTEPEADPERDQRTVFAYQISLKANERDVYEFF
SRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKN
LVQSTTVVAGVSGGLIGPYSGGARRLYVGNLHFNMTEADLRQVFEAFGQVELVQLPLDET
GHCKGFGFVQFARLEDSRNALSLNQQLEIAGRLIKVSAVTDQTGLQDIGAISGDFDDDEG
GGLSLNARSRALLMQKLDRSGTASGISGSVGTPAVNGTGLTLPMAPVLGAAPVVSPGVAP
LPSIPALAGLGVGLQGPTVTVPTVDTIGVPSECLLLKDMFDPKIETEPDFDLDIKEDVRE
ECSKYGNLKHIFVDKHSAGFVYLRFENTQAAAAAQRSLHGRWFAGKMITATYMLPQAYET
KFPDSR
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggattttgatgcctacgattacttggagaaaactgttgaaaatattgagtcccaaaaa
gacagggaggatgctgttaatggcagtggtgaaattgagaagtctagagagaaagatcgt
agtcgacgttcaaagcataggagtgatgagagggatgattatgtggaacgacggtccaag
cgctcaagatcagaagatgattctcatgatcgtgatctacatagagagaggggttcatct
cgtcaacgatcgcggtcaagggatggggaaagggatcggcacaggagtgtccgggaacat
aaggataaggagagagatagggatagatacaaggatagggaggagaggaatgggaaggag
agagagaaggatagatatagagagccggatcatgatcgaggcaaagataagagagaacgt
gttcgggagagtgagagtgagagggaaagggagagagagagagagcgatcgcatcgaagc
aggagtcgatctgataagcatcagattgagcatgatgaaagagagaggagtcatgacagg
gagtacaaagaaagagaaatggaaagagagttgagggaacgagacagagaaaacagacga
tacaaagagaaaaaggaggaaggaactgaaccagaggctgatcctgaacgggatcagagg
acagtatttgcttaccagatatctttgaaggccaatgaaagagatgtgtatgagttcttc
tcaagagctggcaaggtgcgagatgtacgccttataatggatcgcaattcaaggcgttcc
aagggagttgggtatattgagttctatgatgcaatgtccgtccctatggcaatagcactc
tctggtcagcttcttcttggtcaaccagttatggtgaagccatcagaagctgaaaagaat
ctggtccagtcaactacagttgtagctggtgtatctggtgggcttataggcccctattca
ggtggggctcgaaggctttatgttggcaatctacatttcaacatgactgaagctgatctt
cgtcaggtttttgaagcatttggtcaagtggagctggtgcagttgcctcttgatgaaact
ggacattgcaagggttttggctttgtccaatttgcacgccttgaggattccagaaatgca
ctgagtctgaatcaacagttggagattgcaggtcggcttatcaaggtttcagctgttact
gatcaaactggactgcaagatattggagccatttctggtgattttgatgatgatgaagga
ggtggcttgtcgctaaatgcacgctctcgagcacttcttatgcagaagttggatcgcagc
ggcactgcatctggaatttctggttctgttggcactcctgctgtcaatggcactggcctt
actttaccaatggcacctgtcctaggggctgctcctgtggtatctccaggagttgctccc
cttccttctattcctgctcttgctggacttggtgtaggccttcaaggtcccactgttacc
gtgccaactgttgatacaataggtgttccaagcgaatgcttattattgaaggatatgttt
gatccaaaaattgagacggaacccgatttcgatttggatataaaagaagatgttcgagaa
gaatgttcaaagtacggaaatttgaagcatatttttgtagacaagcacagtgctggtttt
gtgtacttacgatttgagaatacacaagctgcagccgctgcacagcgttctctccatgga
agatggtttgctggaaagatgattactgcaacatacatgctgccccaggcatacgagacc
aagttccctgacagcagataa
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