Carya illinoinensis (pecan): 122311945
Help
Entry
122311945 CDS
T08745
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
122311945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cill04131
]
122311945
Membrane trafficking [BR:
cill04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
122311945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
VPS8_N
Clathrin
TPR_VPS8_2
WD40_CDC20-Fz
Beta-prop_HPS5
WD40
Beta-prop_EML_2
Beta-prop_RIG_2nd
WDR55
Beta-prop_EML
WD40_WDHD1_1st
ANAPC4_WD40
WD40_Prp19
zf_RING_Vps8
Beta-prop_TEP1_2nd
zf-RING_Vps41
MinC_N
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
122311945
NCBI-ProteinID:
XP_042982667
LinkDB
All DBs
Position
1:16282052..16305064
Genome browser
AA seq
1978 aa
AA seq
DB search
MTKNLTITEVSPPAMELDLDSFLDSHLTSDDDGGDEDDDLNTVPHRTIDEILNASDSSTS
SSPPPSPPPTHPRPFGLKQEVSESVNDAVSVPPTKPPPESYITETLRPDGNPSFLSKPGL
FSRARPGGGFSEDPFKKFPNSRALPSLFGGVKSNAKPGAALAAAAAASRALPTPHAAAIK
SRRAGTGSSHKALDDSEVGSDGLGSSNEIRNVNAVEDNQKMGDFQSALVVNDKSGGVYRR
NEVLNGVEYDSYGKVSHSKEVKSEAEDAVERKGSRVSDSEEELVETSTSISNTNVERIIG
EEDENTANLGKNACVVGSNDSEFLDADGSEEKVRHSLDEFDEKRKVDQEVTVVALEARNL
DLDKEMHNLKDDEADLAGDEETSSLSDITELVEERIGQLESRRLAEQKSRASMKPLELAE
ELEKKHASTGLHWEEGAAAQPMRLEGVRRGSTTLGYFNIDADNTITRTISSHAFRRDHGS
PQVLAVHANYIAVGMSKGVIVVVPSKYSSYNADLMDAKMLMLGLQGDRSHSPVTSVCFNQ
QGDLLLAGYGDGHVTVWDVQKLSAAKVITGEHAAPVVHALFLGQDSQVTRQFKAVTGDSK
GLVLLHAISVVPVINMFSIKTQCLLDGQKTGIALSASPLLFDEFSGAASISSQGNNVVSS
SSLGSRMGGVVGGDAGWKLFNEASSFAEEGVVIFVTHLTALVVRLTPTLEVYAQLSKPDG
IREGSMPYTAWKCMTQSRENMPPDAAERVSLLAIAWDRKLQVAKLVKSELKIYGKWSLDS
PAIGLAWLDDQMLVVLTLVGQLCLFAKDGTVIHQTSFSVDISGGDDLVTYHTHFINIFGN
PEKAYHNCIAVRGASLYILGPTHLVVSRLLPWKERIQVLKKAGDWMGALNMSMTLYDGQA
HGVIDLPRSLDAVQEAIMPYLVELLLSYVDEVFSYISVAFCNQIGKMEQPDNPSNKGSSV
HSEIKEQYTRVGGVAVEFCVHIKRTDILFDEIFSKFLAVQQRETFLELLEPYILKDMLGS
LPPEIMQALVEHYSSKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLYGALVYLFNKGL
DDFRAPLEELLVVLQNSQKESAAALGYRMLVYLKYCFSGLAFPPGQGALPPTRLPSLRIE
LLQFLLENSDALNSQAVSRLFGEAYLNLYHLLQLDTEATLDVLRCAFVEDEIPKHDFSLQ
DSADDDIEAIKENDNGCKNLLVQDMVNALVHILDRDISQTERSGGKDVVGSLEHWPSKKD
IGHIYEFVAYYVACRRANVSKSVLSQIIEYLTSENNFPPNVSTHGTISKRREKQVLALLA
VVPETDWNASHVLGLCEKAQYYQVCGVIHTSRHRYLAALDSYMKDVDEPIHAFLFINKTV
LELSGNELAVFQSAVISRIPELVDLSREATFFLVIDHFNNESSHILSELRSHPRSLFLYL
KTVIEVHLSGTLDFSNLRGDDIVDSSDARRMKDQSKGLEDYLDKVSNFPKFLRNNPVEVT
DEMIELYLELLCQYEPNSVLKFLETFDSYRVEHCLRLCQEYGIIDAAAFLLERVGDVGSA
LLLTLSGLDSKFVELDTAVESVVSSVASGSAAGLEYLRTAMNTKEVNEIRNILNACIGLC
QRNTPRLNPEESETLWFRLLDSFCNPLMDSENDVLSGGENHVQMLTESSASQEDEEARIV
RWRISKSSRGAHILRKLFSHFIKAIVEGMIGFVRLPTIMSKLLADNGSQEFGDFKLTILG
MLGIYGFERRILDTAKSLIEDDTFYTMSLLKKGASHAYAPRSFVCCICNLLLTKNSSSFS
IRVFNCGHATHIQCEVPDNEASGRGASSGCPICMPKKKSQKARSKSILPENGLVSKFSSR
PQQSHGTSILHRHESDASESPYGLQQISRFEILTNLQKDQRLVQIENMPQLRLAPPAVYH
ERVKKGANIFTGESSDALANIEKPSKNRKLRELRVKGSSLRFPPLKSSIFGKEKSKRL
NT seq
5937 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagaacctcacgatcaccgaagtatcacccccggcaatggaactcgacctcgac
tcgttccttgattctcaccttaccagcgacgatgacggcggcgacgaagacgacgacctc
aacactgttcctcaccgcaccatagacgaaatactcaacgcctccgattcatccacttca
tcttcccctccgccatccccaccgcccactcatccccgcccttttggcctcaaacaggaa
gtctcggagtccgtaaacgatgccgtctcagtcccccccacaaaaccaccccctgagtct
tacattacggaaaccctaagaccggatggaaacccctcgtttttgtccaagcccggactg
ttcagtcgggcccgacccggcggtggtttctctgaggatccgtttaagaagttcccgaac
tcgcgagcgttgccgtcgctgtttggtggggtgaaatcgaacgcgaagcccggggctgct
ttggcagctgcggcggcggcctcgagggctctaccgactcctcacgcggctgcgatcaag
tcgaggagggccgggactgggagctcccataaggctctcgacgattccgaagtgggttca
gatggattgggctcttctaatgaaattcgaaatgtgaatgccgtggaagacaatcaaaaa
atgggcgacttccagtctgctcttgtggtgaatgataaaagtggtggggtttacagaaga
aatgaggttttgaatggtgtggaatatgatagttatggtaaggtttctcatagtaaagag
gttaaaagtgaagcggaagatgccgttgaacggaagggatcaagggttagtgatagtgag
gaagaattggtggaaacaagcacttcaatttcaaataccaatgtagaacggatcattggt
gaagaggatgagaacactgcgaatttaggtaagaatgcctgtgtggtgggcagtaacgac
tctgaatttttggatgctgatggttcagaagaaaaggtccgtcattcattggatgaattt
gatgagaaaaggaaggttgatcaggaagtgacagtggtggcattggaagcacggaattta
gatttagacaaagaaatgcataatttgaaagatgatgaggcggatcttgccggtgacgag
gagacaagttcgttgtctgatatcaccgagcttgtggaagagagaattggacaattggag
agtaggagattagcggaacagaaatcacgggcttcaatgaagccgcttgagttagctgag
gagcttgagaagaagcatgcttctactggtttgcattgggaagagggtgcggctgctcag
ccaatgaggcttgagggcgtccggagaggatcgaccacattgggatacttcaatattgat
gcggataataccatcacaaggactatttcttcacatgcattcagaagagatcatggctca
cctcaagtcttggctgttcatgcgaattatattgcggtgggaatgtcaaaaggggtgatt
gtggtcgtgcccagtaaatattcgagttataatgctgacctcatggatgcaaagatgttg
atgcttggtttgcaaggggatcgatcgcattctcctgtaacttccgtgtgcttcaatcag
caaggggaccttctcctagctggttatggtgatggtcatgttactgtttgggacgttcaa
aaattatcagcagcaaaagttattactggagagcatgcagcaccagttgtacatgcattg
tttctggggcaggattctcaggttactcgtcaatttaaagcagttacaggtgatagtaag
ggtctggttctgctgcatgccatctcagtggttcctgtgattaatatgttctccatcaaa
acccagtgtcttcttgatggacaaaaaacgggaattgcattatcagcttcaccactcctt
tttgacgaattctctggagctgcttctatctcttctcagggaaacaatgtggtttcttcc
agcagtcttggtagtaggatgggaggtgtagttggtggagatgccggctggaaactcttt
aatgaagcctcttcttttgctgaagaaggcgtggtcatatttgtcacccatctaactgct
ctggtggtgaggcttactccaacattggaagtctatgcgcaactttctaagccagatggt
attcgggagggttctatgccttatactgcatggaaatgcatgacacaatcgcgtgaaaat
atgccgccggatgcagcagagagagtttcattgcttgcaattgcttgggatcggaaactt
caggttgcaaagttagtcaaatcagagctaaaaatatatgggaaatggtctcttgatagt
ccagcaataggtctggcttggttggatgatcagatgctggtggttctcacattggttgga
caactttgtttgtttgccaaggatggaactgtgattcaccaaacaagtttttctgttgat
atttccggaggagatgatcttgttacgtatcatactcacttcattaatatctttggaaac
cctgagaaagcttatcacaattgtatagctgttagaggggcttctttgtacatacttgga
cctacacaccttgttgtttctcgccttctcccatggaaggaacgaattcaggttctgaag
aaagcaggtgactggatgggtgcactaaatatgtcaatgacactttatgatggtcaagct
catggtgttattgacctccctagaagcttagatgctgtacaggaggccataatgccatac
ctggtagagttgctattgtcatatgtagatgaagtattttcttatatttcggtggcattt
tgcaaccaaattggaaaaatggaacagccggacaacccaagcaataaaggcagttctgtg
cactctgaaataaaagagcaatacactcgcgttggtggagttgcagtggaattttgtgtt
catatcaagaggactgacatactttttgatgaaattttctccaagtttctagctgttcaa
cagagagaaacatttttggagctcttggagccatatatattgaaggacatgcttggatct
ctacctcctgagattatgcaagcacttgtagagcattatagcagcaaggggtggttacag
cgagttgaacaatgcgtccttcacatggatatctcttccttggatttcaaccaggttgtc
aggttatgtagggagcatggattatatggtgcgctggtgtatctctttaacaaaggattg
gacgattttagggctcctttagaagagctgttggtggtcttacaaaatagtcaaaaggaa
agtgctgctgcacttgggtacaggatgcttgtttatctgaaatactgcttttcaggtctt
gcttttccaccaggacaaggagctctgccccctactcgcttgccttctcttagaatagaa
cttctacaatttctcttagaaaattctgatgccctgaactcacaagcagtttcaagatta
tttggagaagcatacttgaatttgtatcatctcttacagttagatactgaagctacttta
gatgttttgagatgcgcttttgtagaagatgaaatcccaaaacacgacttttcgttgcag
gattcagcagatgatgatatagaggcaataaaagaaaatgataatggatgtaaaaactta
ttggttcaagatatggtgaatgctcttgttcatattcttgatagagatatttcccaaact
gagaggtcaggtggtaaagatgtcgttggatcattggaacactggccttcaaagaaagac
ataggtcatatatatgagtttgtagcatactatgttgcatgcagaagagctaatgtctca
aaaagtgtactgagtcagattatagaatatctaacttcagaaaataattttccacctaat
gtttctacacatggtacaatctcgaaaagaagagagaaacaggtgcttgcccttctagca
gtagtgcctgagactgactggaatgcttctcatgtgttaggtctttgcgagaaagcccaa
tattaccaggtttgtggtgtaattcatactagcagacaccggtatcttgctgctttggat
agctatatgaaggatgtggatgagccgattcatgcattcttgtttatcaacaaaacagta
ttagagctgagtggcaatgaacttgctgtttttcaatcagcagtcatttcccggatacct
gagctggttgacttaagcagagaggccacattcttcttggtcatcgaccatttcaacaat
gaaagttcacatatcctgtctgaacttcgctctcatccaagaagccttttcctttattta
aaaacggtcattgaggttcacttatctggtaccctcgacttttctaatttaagaggggat
gatattgtggattcttctgatgcaagaaggatgaaggatcagtcaaaaggacttgaagat
tacttggataaagtctctaatttccccaagttcctgcgtaacaatcctgttgaagtgact
gatgaaatgattgagctttatttggagcttttatgtcagtatgaacccaattcagtactg
aaattcctggagacgtttgatagctaccgtgtggaacactgtttacgcctgtgtcaggaa
tatgggattattgatgctgctgcattcttgttagaaagggttggtgatgtggggagtgct
cttttacttacactttctggccttgatagcaagtttgttgagcttgatactgctgtggaa
agtgtagtttctagtgtggcttcaggttctgctgctggtttggagtatctcaggacagca
atgaatacgaaggaggtgaatgagatacgcaatatattgaatgcctgtattggactgtgc
cagcgaaacacccctcgtttgaaccctgaggagtcagagacactctggttcagattactt
gactcgttttgcaaccctttgatggattcagaaaatgatgtgctatctggaggagaaaat
catgttcaaatgctaactgaatcatcagcctcacaagaggatgaggaggcacgcatagtt
aggtggagaatctcaaagtccagtagaggagctcatatcttaaggaaattgttctctcat
ttcatcaaagcaattgttgagggaatgataggatttgttcgcctgccaactatcatgtcg
aaactccttgctgataacggcagccaggagtttggtgattttaaacttaccatattgggc
atgctcggaatatatggttttgaaagacgaattctggacactgccaaatccttaatagag
gatgatacgttctataccatgagtttgctcaagaagggggcctctcatgcatatgcaccc
cggagttttgtatgttgtatatgtaatctcctactcacgaagaattcctctagcttcagc
attcgagtttttaattgcggccatgcaactcatatccaatgcgaagttccagataatgag
gcatcgggtagaggagcatcatctggatgcccaatttgtatgccgaagaagaaatctcaa
aaagctagaagtaaatcaattcttccagaaaatggtttagtgagtaaattttcatccaga
ccccaacaatcacatggaaccagtattctacatcggcacgaaagtgatgcatccgagagt
ccttatgggcttcagcaaatttcacggtttgagatcttgaccaatttgcagaaagaccag
agattagtccagatagaaaacatgcctcagctgagacttgcgccaccagctgtttatcat
gaaagagtaaagaaaggagcaaatatttttacaggagaaagtagcgatgcccttgcaaac
atagagaaaccaagtaaaaacagaaaactgagggagctaagagtaaaaggatcgtctctt
cggttcccacctttgaaatcaagtatatttggcaaggagaagagcaaaaggctgtaa
DBGET
integrated database retrieval system
