Carya illinoinensis (pecan): 122312007
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Entry
122312007 CDS
T08745
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122312007
03036 Chromosome and associated proteins [BR:
cill03036
]
122312007
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
122312007
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122312007
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
122312007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MOV-10_beta-barrel
Motif
Other DBs
NCBI-GeneID:
122312007
NCBI-ProteinID:
XP_042982755
LinkDB
All DBs
Position
5:29312045..29316728
Genome browser
AA seq
635 aa
AA seq
DB search
MSLFVEFLRSIFCLQAEEHVVDGNKDDDTTSRNSHLENKSSLRTRTTSSLENDPLYFSYS
LQPPSVPRNPPKSYSKSSASSLKGPPSPTGPSSSSPKPPPTSKSVIYPTTSHAVSEERKK
GATSLFASSISNLPSSSSSSSPVLPNPPKSTPKPSASSLKCPPPSGSSSSSAVPPPTFKP
VLCPTTTTPGNEDRKQSYILEKGTSPIFAVPEYIKRQIKENIVPEILKQPLSPSTYKAYF
TALLYAEDFYLEKWSDFLLKNVTLEFQEAVIYKESTKDKNLSGNLKKKNKTFVVFEIDSI
PERRPFLLSRDLVYARPSGTEIEPFQGFFYRVVKSTRVLVDFGDNFHSQHYASRKYDISF
SFNRVCLKRAHKAVETASNPLVQNFLFPEYCVSRKDNLNPPTLLRVNHEVSKNEFSAIRH
ISSFRGSPPYLLSGSRCVMDSEILSSTGIVVQEAVCEIYRISPKCRILICAPTNSTCDAL
TRSLKKVILESDIFRANAAFRELDEVPADILRSCPIEGECFTCPSLQHLWKFRVILSTFV
SSFRLHNEGIPAGHFSHIFLVDASLAMEPEALIPLANFATDKTAVIVTGASTSHSAWARS
DIARKYGLGESLFDRLYENRLYREFNPMFITQLAQ
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgtttgtagaattcttgcgttccatcttttgtctccaagcagaagaacatgtt
gttgatggtaataaagatgatgacactacctcgaggaacagccatttagaaaataaatca
agtctaagaaccagaaccacatcgtcccttgagaatgacccactttacttttcatattca
ttgcaaccaccttcagttccccgtaatcccccaaaatcttattctaagtcatccgcatca
tcccttaaaggacctccatctccaactgggccatcttcatcttcccctaagccccctcca
acctctaagtcagtcatatatccaactacatctcatgcagtaagtgaagaaagaaaaaag
ggtgcaacatcattatttgcaagttctatatccaatctgccctcatcctcttccagttcc
tctccagttctccctaatcctccaaaatctactcctaagccatctgcatcttccctaaaa
tgtcctcctccatctgggtcatcttcatcttccgctgtgccccctccaacctttaagcca
gttctatgtccaactactactactcctggaaatgaagacagaaaacagagttatatattg
gagaagggtacatcacctatatttgcagttcctgagtacatcaaaaggcagatcaaggag
aacatcgtgcctgaaattctgaagcagcctttgtctccttcaacgtataaggcttacttt
actgctctgttatatgctgaggatttctacttggagaaatggagtgatttcctcttgaag
aatgtgactttggagttccaggaagcagtaatctataaagaatcaaccaaggacaaaaat
cttagtggaaatcttaagaagaagaataaaacatttgtagtttttgagattgattctatt
cctgagaggcggccattccttttatcgagggacttggtctatgcacgaccttcgggtaca
gagattgagccctttcagggttttttttatcgtgtggtgaaaagcactcgcgtattagtg
gacttcggagacaattttcattctcaacactatgcttccagaaaatacgacatcagcttc
tctttcaatagagtgtgcctaaagagggctcataaagcagttgaaactgcatcaaatcct
ttagtccagaacttcctctttcctgaatattgtgtatcccgaaaggacaaccttaaccca
cccactctacttcgtgttaatcatgaagttagtaaaaatgagttctctgcaattcgtcac
atttcaagctttcggggatcaccaccatatcttctcagtggctcacgctgtgtaatggat
tcagaaatactatcaagtactggaattgttgttcaagaagcagtatgtgaaatatatcgg
atctctcctaagtgtcgaattcttatatgtgcacccacaaacagcacatgtgacgcgctg
accagaagtttgaaaaaggtaattttagaatcagatatttttcgagccaatgctgcattt
cgagagctggatgaggtacctgctgacattcttcgttcatgtcctatagaaggggaatgt
tttacttgtccttcattacaacatctttggaaattcagggtaattttgtcaactttcgtt
agtagctttcgattacacaatgaaggcatacctgctgggcatttcagtcacatttttctg
gtagatgcctcattggcgatggagccggaggcattgatacctttggctaatttcgctact
gacaaaacagcagttatagttactggcgcatccacaagtcattcagcttgggcccgctcc
gacattgcgaggaaatatggattgggggagtcactttttgatagactttatgaaaacagg
ctttatagggaattcaatcccatgttcatcacgcagttggcacagtag
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