Carya illinoinensis (pecan): 122312346
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Entry
122312346 CDS
T08745
Name
(RefSeq) coatomer subunit alpha-1-like
KO
K05236
coatomer subunit alpha
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cill04131
]
122312346
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cill04147
]
122312346
Membrane trafficking [BR:
cill04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
122312346
Exosome [BR:
cill04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
122312346
Exosomal proteins of bladder cancer cells
122312346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
EIF3I
TPR_COPA_B
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
ANAPC4_WD40
WD40_RFWD3
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Aa-Ago_N
Motif
Other DBs
NCBI-GeneID:
122312346
NCBI-ProteinID:
XP_042982854
LinkDB
All DBs
Position
6:32793777..32801837
Genome browser
AA seq
1218 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHCKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
KSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR
LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHSTLPLIVSGADDRQVKLWRMNDSKAWE
VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP
EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYTKDRFLRFYEFSTQRDTQVIPIRRPG
STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYFIPKDSISRGDSVQDAKKGIGGSAVF
VARNRFAVLDKSNNQVLVKNLKNEVVKKSGLPISADAVFYAGTGNLLCRAEDRVVIFDLQ
QRIVLGDLQTPFIKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDN
GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRSIVIDATEYI
FKLSLLKKRYDHVMSMIRNSQLCGEAMIAYLQQKGFPDVALHFVKDERTRFNLAIESGNI
QIAVASATAIDEKDYWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNNEKLSK
MLKIAEVKNDVMGQFHNALYLGDVRERVKILENVGHLPLAYITASAHGLQDVAERLEAEL
GDNVPSLPEGKTASLLIPPAPIMCSGDWPLLRVMKGIFEGGLDNVGRGTADEEDEAADGD
WGEELDMVDADGLQNGDVTAILEDGEVAEENEEEGGWDLEDLELPPEVDTPKTSVNARSS
VFVAPTPGMPVSQIWTQRSSLAAEHAAAGNFDTAMRLLTRQLGIRNFAPLRHMFLDLHTG
SHSYIRGLSSAPVISLAVERGWSESASPNVRGPPALVFSFSQLEEKLKAGYKATTAGKFN
EALRLFISILHTIPLIVVESRREVDEVKELIIIVKEYVLGMQMELKRREIRDNPVREQEL
AAYFTHCNLQLPHSRLALLNAMTVCYKARNLATAANFARRLLETNPTIENQAKRARQVLQ
AAERNMTDAAQLNYDFRNPFVICGATYVPIYRGQKDVSCPFCTSRFVPGQEGQLCTVCDL
AVIGADASGLLCSPTQIR
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgttgacgaagttcgagacgaagagtaatagagtaaagggactgagtttccactgcaag
aggccgtggattctcgcgagtctccacagcggcgtgatccagctatgggactaccggatg
gggactctgatcgataggttcgacgagcatgacgggcctgttcgtggcgtccatttccac
aaatctcagccactgttcgtgtctggaggggatgattacaagattaaagtttggaactac
aagttgcacaggtgtcttttcactcttcttggacacctagattatattcgtacagtgcag
tttcaccatgagtacccgtggattgtgagtgccagtgatgatcagactattcgtatttgg
aattggcagtcccgcacttgtatatcagtgttgactggacacaatcactatgttatgtgt
gcctcattccatcccaaagaagaccttgttgtgtcagcctccttagatcagactgttcgt
gtctgggatattggcgccctcagaaagaagacggtttcccctgcagatgatatcttacgg
ctgagtcagatgaacacggatctttttggtggtgttgatgctgttgttaagtatgtatta
gagggtcatgaccgtggggtcaactgggctgcatttcattccaccctccctctgattgtg
tcaggagctgatgatcgccaagtgaaattatggcggatgaatgattcaaaagcttgggaa
gtggacacattgagaggccacatgaataatgtttcatgtgtcatgttccatgccaaacag
gacataattgtatccaactcggaagacaaaagtatacgcgtgtgggatgtaacaaagaga
actggtgttcaaacattccgtcgggagcacgatcgattctggattcttgcatctcaccct
gagatgaatctgctggcagctggtcatgacagtggtatgattgtcttcaagttggaaaga
gagcggcctgccttcgctgtgagtggtgattctctgttctataccaaagaccgctttttg
cgattctatgagttttcaactcaacgagacacacaagtgattccaattcgacggcctggt
tccactagcttgaaccagagtccaaggactctttcttacagtccaactgaaaatgccgtt
cttatttgctcagatgttgatggaggatcttatgagttgtatttcatacccaaagatagc
atcagtaggggtgatagtgtgcaagatgcaaagaaaggcattggaggatcagcggtcttt
gttgctcggaataggtttgctgtgcttgacaagagcaacaatcaagtcttagtcaagaat
ctgaaaaatgaggtggttaaaaagagtggcctcccaatatctgcagatgcagtattttat
gctggaacgggcaacttgctgtgtagggctgaggatagagttgttatatttgatctccaa
cagaggattgttcttggtgatcttcaaacccctttcatcaagtatgttgtttggtctaat
gacatggagagtgttgctctacttagtaagcatgccatcatcattgctagcaagaagctt
gtccaccagtgcactcttcatgagacaatccgtgtaaagagtggggcctgggatgataat
ggtgttttcatttacacaactttaaatcacattaaatactgtctgcctaatggggatagt
ggaataatcagaactcttgatgtcccaatatacattacaaaggtttctgggaataccatc
ttttgcttggatcgcgatggaaaaaacaggtctatagttattgatgcaactgaatatatt
ttcaagctctctcttttgaagaagagatatgaccatgttatgagcatgataaggaactca
cagctttgtggggaggctatgattgcttatctgcaacagaagggattccctgatgtagct
ctccattttgtgaaagacgagagaactaggttcaatttagctattgagagtgggaacata
caaattgcagttgcgtcagctacagctattgatgagaaagactactggtatagattgggg
gtggaggctcttcgccagggcaatgctggtattgtggaatatgcctaccaaaggaccaaa
aattttgagagattgtcttttctttatctaataaccggtaataatgaaaagttgtccaag
atgctgaaaattgctgaagttaagaatgatgtcatgggtcaatttcataatgctctgtac
ttgggcgatgtccgtgaacgtgttaagatcctggagaatgtcggccacttgccgcttgct
tacattacggcttcagcacatgggctacaggatgttgctgagcgtctagaagctgagttg
ggtgataatgttccttctttaccagaggggaaaacagcctccctcctgattccccctgcc
cccattatgtgcagtggtgattggcctcttctgagagtgatgaaaggcatatttgaaggc
gggctggataatgttggtaggggaactgcagatgaagaggatgaggccgctgatggtgat
tggggtgaggagctggacatggttgatgctgatggcttgcagaatggggatgttactgca
attttggaggatggagaggttgctgaagagaacgaggaagagggaggatgggaccttgaa
gatttggagctccccccagaagtagacactccaaagacatctgtcaatgcccgctcttcg
gtttttgtggccccaactcctggcatgcctgtaagccagatttggacccagaggtcgtcg
ctggctgctgaacatgcagctgctggcaattttgatacggcaatgcggttactgaccagg
caacttggaataagaaactttgctccattgagacacatgtttcttgatcttcacactggc
agccattcctatatacgtggattatcatctgctccagtgatatcactggcggttgaacga
ggatggagtgagtctgcaagtccaaatgtgaggggtccgccagcactcgtgttcagtttc
tctcagttggaagagaagcttaaggcaggttacaaggccacaacggctggaaaattcaac
gaggctcttaggctctttattagcattctacataccattcctcttattgttgttgagtca
aggagggaagtcgatgaagtcaaggagttgatcattatagtgaaagagtatgttttgggt
atgcaaatggagcttaagaggagagaaattagggacaatccagtacgcgagcaagagctt
gcagcttatttcactcactgcaaccttcaattgcctcactcaaggcttgccttgcttaat
gcaatgactgtttgttacaaggcaaggaatcttgcaacggcagctaactttgccaggcgg
cttctagagaccaaccccaccattgagaaccaagcaaagagagccaggcaggtgctgcag
gctgcagagagaaatatgacagatgctgctcagttgaactacgatttcagaaacccattt
gtgatttgtggagctacgtatgtgccaatttaccgaggacaaaaggatgtctcttgccca
ttctgtacttctcggtttgtgccgggccaggaagggcagctctgtaccgtctgtgatctt
gcagttattggggcagatgcttctgggttgctttgttcccctactcagattcgatga
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