Carya illinoinensis (pecan): 122312451
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Entry
122312451 CDS
T08745
Name
(RefSeq) PHD finger protein MALE STERILITY 1
KO
K26271
PHD finger protein MS1/MMD1
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cill03000
]
122312451
Transcription factors [BR:
cill03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
122312451
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GFIT
Motif
Pfam:
PHD
PHD_5
PHD_2
SQHop_cyclase_C
Cytokin_check_N
Motif
Other DBs
NCBI-GeneID:
122312451
NCBI-ProteinID:
XP_042982994
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Position
6:complement(18414867..18418584)
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AA seq
654 aa
AA seq
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MSHLDLIGSKKRKRGERVFRFKSFGESGYPVEFIGPFRETVKALLEFGHLETNSSREIPS
WSFQLEFHRHHPVQILLFVVEEPVEASLNRHCNQCQYVGWGHHMICNKKYHFLLPSKDTV
AAYLNCEGNSNNNRAGSGNGKSNLLELQGHIMHGVFHSNGFGHLLSVNGVEMGSDLAGHH
IMEFWDRLCTGLRARKVSLNDNSQKRGMELRLLHGLGYGEPWFGRWGYEFARGTFCVTRS
MYQKAIEAIQGMPLYLLIHHLGTSNHEIPVIFSRYQALSDHSLVTLGDLFNFMLELKSRL
PTENSIDTYNSGITAETNCRWSPKRVEMATRVIVEALKRAEFRWVSRQEVRDAARAYIGD
TGLLDFVLKSLGNHIVGNYLVRRSLNPVTKVLEYCLEDISNVLPNQEGSFMTNQRVKERY
KISSLQLMKDIFYLYKCILKDRKPALGAGIFSAISVASRIILDSKYLIKEYSGDLPFKVE
LGFEGKLNIYCTVLLRSNKEVQAEGTEKAMPPYECVTLKNIATIDELKQEVQRNFREMYW
GLRSLVVESVLNLNANGTDLVFGLVEVGRKLVFQGSTKEQGIMNGQIYECGLNSHVVDCP
CGAKDEDGERMVSCDICEVWQHTRCVRIPNTVEIPHIFLCNRCEQEIVLLPSLP
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcacctggacctgattggcagcaagaaaagaaagagaggagagagggttttcaga
ttcaagagctttggagagtcgggttatccggttgagtttatagggccgttcagggaaact
gttaaagccctccttgaatttgggcatttggagactaactccagcagggaaattccaagt
tggtcatttcagcttgaattccatcgccaccatcccgtccaaatccttctatttgttgtt
gaagaaccggttgaagcatccctcaatcgtcactgcaatcaatgtcaatacgtaggctgg
gggcaccatatgatttgcaacaagaagtatcactttttgttgcctagcaaggacacagtg
gctgcatacttgaactgcgaaggtaactctaataacaacagggcaggctcgggcaatggt
aagtcaaatttattggaattacagggccatatcatgcatggtgtctttcactctaacggg
ttcggacatttgctgtctgttaatggtgttgaaatgggttcggacttggctggacaccac
atcatggaattctgggatcgtttatgcactgggttgcgagcaaggaaagtgagtttgaat
gacaattcacagaagagaggcatggaattaaggctgctacacggactaggatacggggag
ccatggttcggccggtggggatacgaattcgcgcgtggaaccttttgcgttactcgatca
atgtaccaaaaagcaatagaagcaatacaaggcatgcccttgtacctattaatccaccac
cttggcacttccaaccatgaaattcccgttatcttctcaagatatcaagcattatcagat
cattccttagtcacccttggcgacctattcaatttcatgttagagctcaagtctcgtctt
cccaccgaaaactcgatcgatacctataactcgggaatcacggcagaaaccaactgtaga
tggtcgccgaagagggttgaaatggctactcgagtgatagttgaagcattgaagagggcc
gagtttaggtgggtttcaaggcaagaagttagggatgctgctcgtgcctatattggtgac
accggtttgctagattttgtgttaaaatcattgggaaaccatattgttggaaattacctg
gttcgtcgcagcttaaatccagtgacaaaagttcttgagtattgtttagaagacatctca
aatgtgttaccaaatcaagagggttcgttcatgactaatcagagagttaaggaacggtac
aagatcagtagcctacaattaatgaaagacatattctacctgtacaagtgcattctcaaa
gaccgaaagccagcgctgggggcagggattttttcagctatatcggtggcttccaggata
attctcgactcgaaatacctcataaaggaatacagtggagaccttcctttcaaagttgaa
ctggggttcgaaggaaaattaaatatttactgcacggttttgttgaggagcaacaaagag
gtacaggctgaaggtacagagaaagcaatgccgccatacgagtgtgtcacgctgaaaaac
attgccaccattgatgaactaaagcaagaggtgcagaggaacttccgggaaatgtattgg
ggattgaggagcttagttgtggaatcagtgttgaatttgaatgcgaatggaacagatttg
gtttttgggttagttgaagttggccgtaaacttgtgtttcagggcagcaccaaagagcag
ggaatcatgaatggacaaatatatgaatgtggtctgaatagccatgttgtggattgccct
tgcggagcaaaagacgaggatggagaacgaatggtttcctgcgatatctgcgaagtttgg
cagcacacccgatgtgttcggattccaaatactgttgaaattccacacatatttttatgc
aaccgatgcgagcaggaaatcgtactattaccttctctaccttag
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