Carya illinoinensis (pecan): 122312552
Help
Entry
122312552 CDS
T08745
Name
(RefSeq) endoribonuclease Dicer homolog 1 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cill03036
]
122312552
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122312552
microRNA pathway
RISC loading complex
122312552
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
dsrm
PAZ
Helicase_C
DND1_DSRM
DEAD
ResIII
Dicer_dsRBD
Dicer_PBD
SNF2-rel_dom
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
122312552
NCBI-ProteinID:
XP_042983132
LinkDB
All DBs
Position
1:complement(18346825..18364943)
Genome browser
AA seq
2000 aa
AA seq
DB search
MENEAKVSGNSGGELTRASSADDMRPSYWLDACEDITYDLVDFDSCTVPDSVDNISNQDG
LVSDFFGGIDHILESIKNGGGLPLLPIAETNSSGNGNCTAGEDGCFQNGQSRDFKMQAED
PFLQSDGTQKETTENKVLVAAEGCGNGSDACKRYQGDNGNSVLDMNGERRLAHYSSEDGV
PKLERRGTEGSRERGMDMEERGSKRARLGNYNSERCHLSRGQYHSKDRERGSGRKRPRDW
EEIDRRDRDIVRRREHYSCKRRDGRERDCRDREPKGYWERDRSASSEMVFRLGTWEADRH
KEAKVANDKNQECNGRAERKSEEPKEKIPQEKARQYQLDVLEQAKKKNTIAFLETGAGKT
LIAVLLIKSVSDDLQRENKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFW
DARRWQREFETKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEF
YHTTAKDKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRRELEKHVP
TPSEVVVEYDKAASLWSLHEQIKQMEAEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVY
GVSERTESDGAANLIQKLRAINYALGELGQWCACKVAQSFLTALQNDERANYQLDVKFQE
SYLNKVVSLLQCQLSEGAVSEKDTKVAHSESDVAHDGIDADDIEEGELPDSHAGVFAVVS
GGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQNTEDFRAIIFVERVVSALVLPKVFAEL
PSLSFIKCASLIGHNNSHEMRTCQMQDTISKFRDGRVTLLVATSVAEEGLDIRQCNVVIR
FDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRKEAIERTDLS
HLKDISRLISVDTSPGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMEQ
HERSGGPTEYSCKLQLPCNAPFEKLEGPVCSSIRLAQQAVCLAACKKLHEMGAFTDMLLP
DKGSGEEREKVDQNDEGDPLPGTARHREFYPEGVADILKGQWILSGRDVCDYSTLLHLYV
YSVKCVNIGSSKDPFLTQVLDFAVLFGNELDAEVLSMSMDLFIARTMSTKASLTFRGSID
ITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPVVGDKNVDPMREIDWDLI
EKIINTDAWNNPLQRARPDVYLGTNERTLGGDRREYGFGKLRNGMAFGQKSHPTYGIRGA
VAKFDVVKASGLVPGRDARDLQTHVDLTRGKLMMADTCMSAEDLVGRIVTAVHSGKRFYV
DSIHYDMTAENSFPRKEGYLGPLEYSSYADYYKQKYGVELIYKQQPLIRGRGVSYCKNLL
SPRFEHKEAHEGEAEENLDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLA
IQLKDIINYPVPVSKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEG
QLTRMRQQMVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDAKDGETSLFD
QDRSLAESQRGMGRCIDAYEDDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGG
KNAANHLMKWIGIQVEFDADEIACMTRPSNVPESILRSVNFETLEGALNIKFKDRGLLVE
AITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFA
RVAVKHNLHVHLRHGSSALEKQIRDFVKEVQDELLKPGFNSFGLGDCKAPKVLGDIVESI
AGAIFLDGGRDTTVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGN
LATVEVFIDGVQVGIAQNPQKKMAQKLAARNALAALKEKETAEAKEKSDENGKKKKNGNQ
TFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFSVRVNTTDRGWTDECVGEPMPSV
KKAKDSAAVLLLELINKLYS
NT seq
6003 nt
NT seq
+upstream
nt +downstream
nt
atggagaatgaggctaaggtctccggaaacagtgggggtgagctgacacgtgcgtcatcc
gccgacgatatgaggccctcttactggctggatgcctgtgaggacattacctacgatctt
gtcgattttgactcttgtactgttcccgattctgtggataacatttccaatcaggatggc
cttgttagcgatttcttcggtggaattgatcacatacttgagagtatcaagaatggtggc
ggcctccctctccttccaattgctgaaactaattcctctggcaatggaaattgcactgct
ggggaggatggatgtttccagaatgggcagtcccgggacttcaagatgcaagctgaggac
ccatttttgcagtccgacggaacccagaaggaaactacggaaaataaagtactggtggcg
gctgagggttgcggtaatgggagtgatgcttgcaagcgttatcaaggcgataatgggaat
agtgtattggatatgaatggagagcggagattggctcattactcgagcgaagatggggtg
ccaaagcttgaacgtaggggtactgaggggtctagggagcggggtatggatatggaagaa
aggggtagtaaaagggctaggcttggtaactacaatagtgaaaggtgtcatttgagcaga
gggcagtatcactccaaggatagggaaaggggttctggtaggaagaggccgcgagattgg
gaagagattgataggagggatagggatattgttaggaggagagaacattacagttgtaag
cggagggatgggagagagagagattgtagggatagggaaccgaagggctattgggagagg
gacaggtcggcgtctagtgagatggtttttcgattaggtacttgggaagctgaccgccat
aaagaggcaaaggtggccaatgacaaaaaccaggaatgcaatggaagggcagagaggaaa
tctgaagaacctaaagaaaagattcctcaagagaaagcccgacaatatcaattggatgtt
cttgaacaggcaaagaagaaaaatacaattgcttttcttgaaacgggggctggaaagaca
ctcattgctgtgcttctcattaaaagtgtttccgatgatttgcaacgggagaataagaaa
atgcttgctgttttcttagttcctaaagtgccactagtttatcagcaagcagaagttatt
cgtgaacgaactggctaccaagtggggcattattgtggtgaaatgggtcaagacttctgg
gatgcgcgaagatggcagcgtgagttcgaaacaaagcaggttttagtgatgacagctcaa
attctgttgaacattctgaggcacagcataataaaaatggaagcaattaatcttctcatt
cttgacgagtgccatcatgcagtgaagaaacatccatattccttagtgatgtctgagttc
tatcacacaacggcaaaggataagagaccatcggtatttggaatgaccgcttcaccagtt
aatttaaagggggtttccagtcaagtagattgtgcaataaagattcgtaatcttgaaagt
aaactagattccatagtgtgtaccattaaagatcgtagggagctggagaaacatgtgcca
acaccctcagaagttgtggtggagtatgacaaagctgccagcttatggtcccttcatgag
cagataaaacaaatggaagctgaagtggaagaagctgcaaaatcaagctctagaagaagt
aaatggcaattcatgggagctagagatgccggggccaaggaggagctgcgccaagtctat
ggtgtatctgaaagaacagaaagtgatggggctgctaatttgatccaaaagttgagggct
ataaattatgcgcttggtgaactgggtcagtggtgcgcttgtaaggttgcacaatctttt
ctgactgctttacaaaatgatgagagggcaaactaccagcttgatgtcaagtttcaagaa
tcctacctcaacaaggttgtatctctcttacagtgccagttatctgagggggctgtttct
gaaaaggatacaaaagttgctcactcggaaagcgatgtggctcatgatgggattgatgct
gatgacattgaggaaggagagcttcctgacagtcatgctggtgtatttgcagtggtatct
ggtggggagcatgtggatgtgataataggagctgctgttgctgatggaaaagtgacacca
aaagtgcagtcattgattaaaatacttctcaagtatcagaacacagaagattttcgggca
atcatttttgttgagcgagttgtatctgctttagttcttcctaaggtctttgcagagctt
ccatctctaagctttattaaatgtgcaagcttgataggtcacaataatagtcacgaaatg
cgcacatgccaaatgcaggacacaatttccaaattccgggatggtcgtgtgacattgtta
gttgccacaagtgttgctgaggaaggcctagatattcgccaatgtaatgttgttattcgc
tttgaccttgcaaaaactgtcttggcatacattcagtctaggggccgtgctaggaagcct
gggtctgattatattctgatggttgagaggggaaatttgtcacatgaagcattcttaagg
aatgccaggaatagtgaagagaccttgcggaaagaggcaatagagagaactgaccttagt
catctcaaagacatttccagattaatttcagtggatacatctccaggaacagtttaccag
gttgagtcaactggtgctgttgtaagcttaaattctgcggttggactcatccatttctac
tgctctcaactacccagtgacaggtattcaatacttcgtcctgagtttattatggagcag
catgaaaggtcaggaggtcctactgaatattcatgcaagctccaactgccctgtaatgca
ccatttgagaaacttgagggtcctgtctgcagttcaatacgccttgcacagcaggctgtt
tgtttggctgcttgcaagaagctacatgagatgggagcatttactgacatgctcttgcca
gacaagggaagtggggaagaaagagaaaaagttgatcagaatgatgaaggagatccactc
cctgggactgccaggcatagagagttctatcctgaaggagtggctgatattcttaaggga
caatggattttatctggaagggatgtttgtgactactcaacgttgcttcatctttatgtg
tattctgttaaatgtgtaaatattggctcttcgaaagatccgttcttgactcaagtttta
gattttgccgtacttttcggcaatgagctggatgcagaggtgttatcgatgtcgatggat
ctgtttatcgctcgaaccatgagtacaaaagcatctcttaccttcagggggtcaatagat
atcactgaaagtcagttggcatcccttaagagttttcatgtaagattaatgagcattgta
ctggatgtggatgttgaaccttccactactccttgggatcctgctaaggcatatttgttt
gtccccgtggttggcgataagaatgtagatcctatgagagaaattgactgggatctgatt
gaaaaaattattaatacagatgcatggaataatccccttcagagagctcgaccagatgtt
tatcttggcacaaatgagagaacacttggtggtgacagaagggagtatgggtttgggaaa
ttgcgtaatgggatggcttttggacagaaatcccatcccacctatggaatcagaggagcc
gtggcaaagtttgatgttgtgaaagcttctggattggttcctggccgggatgccagggat
ttgcaaacgcatgtggatttgaccagaggaaaattgatgatggctgatacttgtatgagt
gcagaagatttggtagggagaattgttacagccgttcactcgggaaagaggttttatgtg
gactcaatacactatgatatgactgcagagaattctttcccaaggaaagaaggctatctt
ggtcctttggagtacagctcatatgctgattactacaagcagaagtatggagttgaatta
atctataagcaacaacccttaataagagggcgtggtgtctcatattgcaagaatctattg
tctcctcggtttgagcacaaggaagcacatgaaggtgaagctgaagaaaatcttgacaaa
acatactatgtgttcctccctcctgagctgtgcttggtacacccacttcctggatcactt
gttcgtggtgcccagagattgccctctataatgaggagggttgaaagcatgctgcttgcg
atacaacttaaagatattataaactatcctgtccccgtttcgaagatcttggaagccttg
actgctgcttcatgccaggagactttttgttatgaaagagcagagcttctgggagatgct
tacctaaagtgggttgttagtcgatttctttttcttaaatacccccagaaacacgagggt
cagcttacgaggatgaggcagcaaatggtgagtaacatggttttatatcagtatgcattg
agtaaagggcttcagtcatatatccaagcagatcgctttgctccatcccgatgggctgct
cctggggttttgcctgtctttgatgaggatgccaaggatggagaaacatccttatttgat
caggacagatcgcttgctgaaagtcagcgtgggatgggtcgatgtattgatgcatacgag
gatgatgaaatggaagatggtgagcttgagagtgactctagttcatatagagtcctctcc
agcaagactcttgcagatgttgtcgaagcacttattggagtttattatgttgaaggtggg
aagaatgctgctaatcatctaatgaaatggattggcattcaggtagagttcgatgctgat
gagatagcctgcatgacaaggccatcaaatgttcctgaaagcatactcagaagtgtcaac
tttgagaccttagaaggtgctctgaacattaagttcaaagacaggggcctgttagtggaa
gctattactcatgcttcccgaccatcttctggagtatcctgctatcagcgtctggaattt
gttggtgacgctgtcttggatcatctgataacaaggcatttgtttttcacatacacagat
ctgccccccgggaggttgactgacctgcgagctgcggctgtaaacaatgaaaattttgca
cgtgttgcagttaaacataatctgcatgtgcaccttcgtcatgggtcaagtgcgctcgaa
aagcagattcgggactttgtaaaagaagttcaagatgagttattgaaaccaggattcaac
tcttttggtttgggtgactgtaaagctccaaaagttcttggtgacattgtagaatccatt
gctggggccatttttcttgacggtgggcgtgataccactgttgtttggaaggtgtttcaa
cccctcttgcatccaatggtaaccccagagacactcccaatgcatcctgtgcgtgagctt
caagaaaggtgccaacaacaggctgagggcttggaatacaaagcaagtcgaagtggcaat
ttggctactgttgaagtctttattgatggtgtgcaggtaggaattgctcagaatccacaa
aagaagatggcacagaaactagctgccagaaacgcacttgctgctttgaaagagaaggaa
actgctgaagccaaggagaaatctgatgaaaatgggaagaaaaagaagaatgggaaccaa
acatttacgagacaaacattgaacgatatctgcttgcgaagaaactggcccatgccattc
tatcggtgtgtgaacgagggtggccctgcacatgcaaagcggttcacattttctgtacgt
gtaaataccactgatagaggatggacagatgaatgtgtaggagagcctatgccgagcgtc
aaaaaggccaaggattctgctgccgttcttctcttggaactcataaataagttgtactcc
tga
DBGET
integrated database retrieval system
