Carya illinoinensis (pecan): 122312874
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Entry
122312874 CDS
T08745
Name
(RefSeq) SWI/SNF complex subunit SWI3D
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122312874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122312874
03036 Chromosome and associated proteins [BR:
cill03036
]
122312874
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122312874
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122312874
PBAF complex
122312874
GBAF(ncBAF) complex
122312874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
ZZ_ADA2
Motif
Other DBs
NCBI-GeneID:
122312874
NCBI-ProteinID:
XP_042983470
LinkDB
All DBs
Position
6:complement(33247802..33258432)
Genome browser
AA seq
1054 aa
AA seq
DB search
MEDKRSEAGIAPAAGVESPASEPASSRRRAGAQKRKASNLGSSNSSSGPSKRVTREKALL
SHAPIHNGPLTRARQGPNNFAGAAVLASAGGAAASAKKSNDQAAPAVLVEELSKESELEA
LEAVMEAEFEAIRSRGANVHVVPSHCGWFSWTKVHSIEELTLPSFFNGKSETRTPDMYIE
IRNWIMKKFHFNPNTPIELKDLSELEVGDLDARQEVMEFLDHWGLINFHPFPPTDSALPS
ADNDGETDKDSLVEKLYRFETLEMCPPVFPKTNLTTPAVPSGLFPESAIAEELARDEGPS
VEYHCNSCSADCSRKRYHCQKQADFDLCTDCFNNGKFGYGMSSLDFILMEPAEVPGVSCG
KWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFLQMPIEETFLDGDVDIDASS
KEIVDPDSTNNDSSVAKDAPETEDVRTGAGEGQPLTSAMETSNTDTSEVKIAEESRQEDG
SELKVSQEVSRADEISEVQVDQEVGENWALKALREAFEAVGYPPEPDNPLSFAEVGNPVM
ALAVFLARLVGPDAAIASAHSSLKSISGCSPGLQLAARHCFLLEDPSDGKKEPVPVGSER
DAQEDGNLEGRNEKEGNSPSVLDEKELSNNHNNNNIEECATEETPNGKSAGKAHAAKEQG
VIASSEVVRPQNLDETSNSGLPKDHPQSTMMESDDLTSKVELPPSSVEESKERTSVGEPL
LPVEAPKVEHTVSDSLHAEKNEQEPVTSDSVREPPQRTEAPKDGILSDSLPPKEYDRDQS
VATKSSGKPLQSSEVSMDVDVVSDSLPNKKNEPQQPVPSNSVEEPSQPTEAPTDVVMVSD
SVASENNQPSQPVTSNSVDENGANKGEDLIEEGKTVKHETIERKNLNKFDKVKRAAVTAL
SAAAVKAKLLANQEEDQIRQLATFLIEKQLHKLETKLAFFSEMENVVMRVREQLDRSRQR
LYHERAQIIAARLGLPASASRAMPSSLPTNRIATNFANSVARPPMSMTYQRPSSMLRHMG
TVAPSPSNPLTSNTVAGSSIRPSGQDKLSSVGTK
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggaagataagcgcagcgaagcaggaatcgcaccggcggctggagtcgaatctccggca
tctgagccggcatcgtcgcggaggcgagccggagcccagaaaaggaaagccagcaacctc
ggctcatcgaactcttcgtctggaccgtcgaaacgcgtgactcgcgagaaggccttgctc
tcccatgctccgatccataacggtcccttgacgagggcacgccagggccccaacaacttc
gctggcgcggccgttttggcctcggcgggtggagcggccgcctctgccaagaagtcgaat
gatcaggcggctccggcggtcctggtggaggagctgagtaaggagagtgagttggaggct
ttggaggctgtaatggaagctgaatttgaagctatcagatctcgaggcgctaatgttcat
gtggttcccagtcattgcggttggttttcatggacaaaagttcactctattgaggagctt
acattgccttctttcttcaatggaaagtctgagactcggactcctgatatgtatattgaa
atacgtaattggattatgaagaaattccattttaacccgaacacaccaattgaattgaaa
gacttgtcagagcttgaagttggagacttggatgcaaggcaggaggtaatggagtttttg
gaccactggggtttgattaatttccaccctttcccaccaacagattctgctttgcccagt
gcggacaatgatggggaaactgacaaggattccttggttgagaaattgtatcgctttgaa
acgctcgaaatgtgtcctcctgtttttccaaagactaatcttacaactccagctgtgcca
tctggactttttccagagtctgcaattgctgaagagttggccagggatgaggggccatca
gttgagtaccactgcaactcttgctcagctgattgctctcgcaaacgctaccattgccag
aagcaggcagattttgatctatgtactgattgctttaacaatggaaaatttggttatggt
atgtcatcgttggattttatactcatggagcctgctgaggttcctggggtaagctgtggg
aaatggaccgatcaggagacactccttctccttgaagcactagaactttacaaagaaaac
tggaatgagatcgcggaacatgttgctacaaagacaaaagctcaatgtatattgcatttt
cttcaaatgccaattgaggaaacattccttgatggtgatgtcgatattgatgccagttcc
aaagaaattgttgacccagattctactaataatgattcatctgtcgctaaagatgcccct
gaaacagaggatgttaggactggtgctggtgagggtcagcccttgacttctgctatggaa
acttcgaatacagatacaagtgaagtgaagattgctgaggagtcaaggcaagaagatgga
agtgagttgaaagttagtcaggaagtttcaagggcagacgagatcagtgaagttcaagtt
gatcaggaggtgggtgaaaactgggcactgaaggctctaagggaagcatttgaagccgtt
ggttaccctccagaacctgataacccactttcgtttgccgaagtggggaatcctgtcatg
gcattggcagtattcctggcacgactggtaggacctgatgctgcgattgcttcagcccac
agttccctaaaatctatatctggctgttctcctggccttcagctggctgccaggcactgt
tttcttttggaagatccatcagatggcaagaaagaaccagttccagttggttctgagagg
gatgctcaggaagatggaaatctggaaggcagaaatgagaaagaggggaactctccctca
gtcttggatgagaaagaattatctaataaccacaataacaataacattgaagaatgtgct
actgaagaaaccccgaatggtaaatctgcagggaaagcacatgctgcaaaggaacaaggc
gttatagcttctagtgaggtagttagaccacaaaatctggatgaaacaagcaattcaggg
ttaccaaaggaccatccacagagtaccatgatggaatcagatgatttgacatccaaggtg
gaacttccgccaagttctgtggaggaatcaaaagagagaacttcagttggagagcctttg
ctacctgtagaggcgccaaaagttgaacatacagtttctgattctctgcatgctgaaaag
aatgagcaggaaccagtcacatcagattcagtaagagagccaccacaacgtacagaggca
ccaaaggatggtattttgtctgattctctgcccccaaaagagtatgaccgggatcaatca
gttgctaccaaatcaagcggaaagcctctccaatcttctgaggtatcaatggatgtagat
gtggtgtctgattctctgcctaacaaaaagaatgagccccaacagccagttccatcaaat
tctgttgaagagccctctcaacctacagaggcaccaacggatgtagttatggtgtcggat
tctgtagcctcagaaaataatcaaccttcacaaccagtaacatcaaattcagtggatgaa
aatggagcaaataaaggtgaggacctaattgaagaaggtaaaacagtcaaacatgagacc
atcgaaaggaaaaacctgaacaaatttgataaagtaaagcgtgctgcagttacagcactc
tctgcagcagcagtaaaggcaaaacttctggcaaaccaggaagaagaccaaatccgacaa
cttgctacctttttgatagaaaagcagttgcataagttggaaaccaaattagctttcttt
agtgagatggaaaatgtggtaatgagagtaagggagcaattggacaggtcaaggcagagg
ctttaccatgagagggcacagataattgcagctcgacttggtttaccggcttccgcatcc
agagcaatgccatcatcgttacctaccaacagaattgccacaaactttgcaaactcggtt
gcaaggcctccaatgagcatgacttaccaaaggccgtcatcaatgttaagacacatgggg
acagtggctccctccccctcaaacccgttgacatccaatacagtagctggaagctcaatt
cggccatctggccaggacaagctttcttcagttgggacaaagtag
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integrated database retrieval system
