Carya illinoinensis (pecan): 122313075
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Entry
122313075 CDS
T08745
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill04120
Ubiquitin mediated proteolysis
cill04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122313075
04120 Ubiquitin mediated proteolysis
122313075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cill04121
]
122313075
Enzymes [BR:
cill01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122313075
Ubiquitin system [BR:
cill04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122313075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
FlxA
zf-RING_16
zf-RING_5
zf-HC5HC2H
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
122313075
NCBI-ProteinID:
XP_042983733
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All DBs
Position
6:3945229..3954100
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AA seq
555 aa
AA seq
DB search
MMRLHSYAGLSLIATLAVVYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCIMWQL
TKQVFLGSLREAEIERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLV
QKRVEYIETTPSVPIISHIRIVSFMGFLLLLDSLFLYNNIKFLMKEKKASVSVFFSFEYM
ILATTTVSTFLKYVFYVIDMLMEGQWERKPVYTFYLEIIRDLLHLSMYLCYFLVIFMNYG
VPLHLIRDLYETFRNFRIRLVDFIRYRKITSNMNDRFPDATPEELNASDVTCIICREEMM
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTNTAAGHGSRSDANQQGTGTG
STSAQGSGVAGDNLSQHQTRLQAAAAAASIYEKSYVYPSANTLVWSPGYAVLPQVQRTSA
DSANSAARESSGEEASIGQQEPQFTTSGGPAKSSSPQYPHCIFVPFQAPGTNVTFVERSG
DNLNIPDLQLEAQKQFLRHQIVVMQNQLQLLQKPKVEENTDVGSTTTSDNKGKNVATTSS
VSDCGRHGEIEEADV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggctgcattcttatgctgggcttagtttaattgcgactctggcggtggtatac
catgcatttaacagtagaggccagttttatccggccatggtttatttgtcaacctctaag
atcagcttggtgctccttctcaacatgggcctggtcattatgtgtatcatgtggcagttg
acgaaacaggtgttccttggttcactcagagaagcagagattgagaggctaaatgagcag
tcatggagggaggtcatggaaatcttatttgccatcactattttccggcaggacttttct
gttacatttcttgctatggtcacggctctattgctaatcaaggctttgcattggttagtt
cagaagagggttgagtacattgagactactccatcagtacccatcatatctcatattcgg
attgtttcttttatggggtttctccttcttctggatagtctcttcttatacaataatata
aagtttttgatgaaggaaaagaaggcgtcagtttcagtcttcttttcatttgagtacatg
atactggcgacaacaacagtttcaacatttctaaaatacgtattctatgtcattgacatg
cttatggagggacagtgggaaaggaagcctgtctacacattttacttggaaattatccga
gacttgcttcacctgtctatgtacttgtgctacttccttgtgattttcatgaactatggt
gtgcctttgcacttaatacgagatctctatgaaacgtttagaaatttcaggattcgtctt
gttgatttcattcgttatcgaaagatcacttcaaacatgaatgatcgatttccagatgca
acaccagaagaactcaatgcaagtgatgtaacatgcatcatttgtcgtgaagagatgatg
acggccaagaaactaatttgtggacatctatttcatgtgcattgcctccggtcatggtta
gagcgacagcatacttgtcctacttgcagagccctagttgtaccacccgaaaatggaaca
aatacagctgcagggcatggatctcggtcagatgctaatcagcaagggacaggcacagga
agtacgtctgctcagggtagtggggtggcaggtgataatttgagccagcatcaaacaaga
ctccaagctgctgctgcagctgcctcaatatatgagaaatcttatgtttatccttctgca
aatacgctagtatggtcccctggatatgctgtacttcctcaggttcaaagaacttcagct
gattctgccaactctgctgccagggaatccagtggagaagaagcttccattggacaacaa
gaaccacagttcacaacctctggcggacctgcaaagtcatcctctccccaatatccacac
tgtatatttgttccttttcaggcacctggaaccaatgtgacttttgtagagaggtctggc
gacaatctaaatataccagacttgcagttggaagctcagaaacaatttcttagacatcag
attgtggtaatgcaaaatcagctccaacttctgcagaagccaaaagttgaggaaaacacg
gacgttggttcaacaacaacatcagataacaaaggaaagaatgttgcaacaacatcatct
gtctcagactgtggccgtcatggggagattgaagaggctgatgtataa
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