Carya illinoinensis (pecan): 122313351
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Entry
122313351 CDS
T08745
Name
(RefSeq) protein CHROMATIN REMODELING 35-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122313351
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cill03400
]
122313351
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
122313351
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
AAA_16
Motif
Other DBs
NCBI-GeneID:
122313351
NCBI-ProteinID:
XP_042984206
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Position
6:complement(32921096..32928524)
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AA seq
926 aa
AA seq
DB search
MISLLVSPHNELIMFGVIILVSYLFTCDSSYVTQSVSRSGFCQTGHKRLKLSDNGKDYKS
IAFPASMLDDIEQRKPKTSPEVIDYGNPFAIPDLLERLGSGKYGSVTKDIEALIARRMQM
LHPYFSKYPTLSNTFLEAEKNQSKEASKQATRTSDINIIDLEDEHVTNDVKALAPPVVVI
ESDDEDNGYQEPFVPFREIVLPRPAGQFLMKDFLDYRVPLANTKKGGAQREKASAELKVK
RENGDELEIKGEKGVYVGIDDEENHQNDAEDDGLEDMWKEMSMALECSKDDAVDPPSEEQ
ARGGEDCDHSFVLKDDLGYVCRICGVIDRGIETIFEFQYNKIKRSTRTYMPDSRNAKDRD
STEIFGVKYSEDDTMATEISAHPRHTKQMKPHQVEGFNFLVSNLVGDSPGGCILAHAPGS
GKTFMIISFMQSFLGKYPHARPLIVLPKGILATWKKEFQTWQVEDIPLYDFYTVKADNRS
QQLEVLKQWVEHKSVLFLGYKQFSTIVCDNGASNTSASCQEILLKAPSILVLDEGHTPRN
EDTNVLQSLAKVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLRLETSRAVVKRIMSRV
DIPGSRRQFKAGADAAFYDLVEHTLQKDKDFRRKVGVIQDLREMTSKVLHYYKGDFLDEL
PGLVDFTVVLNLSSRQKHEVSKLKKLVRKFKISSVGSAVYLHPKLNSFSENHAIADHLVD
ELLEKIDVKDGVKAKFFLNMLSLCESAGEKLLVFSQYLLPLKFLERLAVKIKGWSPGKEI
FVISGESSSDHREWSMERFNNSSDAKVFFGSIKACGEGISLVGASRIIIMDVHLNPSVTR
QAIGRAFRPGQKKRVFAYRLVAADSPEEEDHGTCFKKELISKMWFEWNEYCGYRDFEVET
VDVKDCDDLFLESSLLGEDIKALYRR
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgatctcactattagtttcccctcataatgaacttattatgtttggagtcattattctt
gttagttatttatttacatgtgatagttcatatgtcacacaatctgtatcgagatcaggg
ttttgccaaacaggacataaaagactaaagctatcagataatggaaaagattacaaaagc
atagccttccctgcaagcatgcttgatgatattgaacagaggaaaccaaagacctcccca
gaagttattgattacggtaatccttttgctatccctgacctcctggaaaggttaggctct
ggtaaatacggaagtgttacgaaagatatagaagccctcattgctcgaaggatgcagatg
ctgcacccttatttctccaagtatcccactctttcaaatacattcttggaagcagaaaag
aaccagagtaaagaggcttcgaaacaagctactcgcacatcagatattaatatcattgat
ttggaggatgaacatgttacaaatgacgtcaaagcactagcaccgccagttgtagttatt
gaatcagatgatgaagacaatggatatcaggagccttttgttccttttcgggagattgtc
ttgccaagaccagctggacaatttctcatgaaggactttttggattatcgtgtccctctt
gctaatactaaaaagggtggagctcaacgagaaaaagcaagtgctgagctcaaagtcaag
agagaaaacggtgatgagctcgaaatcaagggagaaaagggtgtttatgttggcatagac
gatgaagaaaatcatcaaaatgatgctgaagatgatggcctggaagatatgtggaaggag
atgtcaatggcgttagaatgttcgaaggatgatgctgtagatcctccatctgaagaacaa
gcaagaggaggggaagactgtgatcattcttttgtcttgaaggatgatcttggttatgtt
tgccgcatttgtggggtaatagacaggggtattgagacaatattcgagttccagtacaat
aagatcaaaaggagtacccggacttacatgcctgattctcggaatgccaaagacagagac
tcaactgagatatttggagttaaatattctgaagatgatacaatggcaactgaaatatct
gcccatccaaggcatacaaagcaaatgaaacctcatcaagtggagggtttcaattttctt
gttagcaacttggtgggtgatagtcctgggggctgcatcctggcccatgctcctggatct
ggaaagacattcatgataatcagttttatgcaaagtttcctgggaaagtatccacacgcc
agaccacttattgtactccccaaaggaatactggctacatggaaaaaggagttccagacg
tggcaagtggaggacattccactgtatgatttttacactgtcaaggcagataatcgatct
cagcagctagaggtgttgaagcagtgggtggagcataagagtgtccttttcttagggtac
aaacaattctcaacaattgtttgtgacaatggagctagcaatacctctgcttcatgtcaa
gagatacttctcaaggctccttcaattcttgttctggatgaagggcacactccacgaaac
gaggacacaaatgtgttacagtcacttgcaaaggtgcaaacgcctagaaaagttgtactt
tcaggaaccctctaccaaaatcatgtcaaagaggtgttcaatattttgaatctggtccga
ccaaagtttttacgattggaaacctctcgagctgttgtcaagcgcatcatgagtagagta
gatatacctggttcgagaaggcagtttaaagcaggtgctgatgcagctttctatgacttg
gttgaacacactttacagaaagacaaggattttaggaggaaagtgggtgtcatacaagat
ttgcgtgagatgaccagcaaggtccttcactattataaaggggacttcttagatgagctt
cctggtcttgttgatttcactgtggtgctgaatttaagttccagacagaagcatgaagtt
tcgaaattaaaaaagttggtgaggaaattcaagataagttctgttgggagtgccgtctat
cttcacccaaaattgaattctttctctgagaatcatgcaattgctgatcatttggtggat
gagttgttagagaaaatagatgtgaaagatggagtgaaggcgaaattctttcttaatatg
cttagcctatgtgagtcagccggagagaagctgctggttttcagtcagtacctcctaccc
ttgaaatttctagagcgattagctgtgaagataaagggttggagtcctggaaaagaaatc
tttgtgatttctggtgaatcaagttctgaccatcgtgaatggtccatggagcgcttcaac
aattcttctgatgccaaagtcttctttggctccatcaaggcgtgtggggagggtatatct
ttggttggggcatcccgcataataattatggatgtacatcttaatccgtcagtgacccgg
caagcaataggtcgtgcatttcgaccgggtcaaaagaagagagtgtttgcatatcgattg
gtagctgctgattcgcctgaagaggaagatcatggcacttgcttcaagaaggagttaatt
tcaaagatgtggtttgaatggaatgaatattgtggttatcgggatttcgaagtggagact
gttgacgtgaaagattgtgatgatctcttcttggaaagttcactcttaggggaagacata
aaggctctgtacagaaggtag
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