Carya illinoinensis (pecan): 122313393
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Entry
122313393 CDS
T08745
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122313393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122313393
Spliceosome [BR:
cill03041
]
Complex C
Other components
Step II factors
122313393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_SPT8
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
eIF2A
WD_LRWD1
Beta-prop_NWD2_C
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_SCAP
PAN2_N
Motif
Other DBs
NCBI-GeneID:
122313393
NCBI-ProteinID:
XP_042984284
LinkDB
All DBs
Position
6:24917575..24923252
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AA seq
591 aa
AA seq
DB search
MDLLRTYTDQNDVELDDPEDHNQNPNPNTPSPDASPPRLLPGKSAAPKVDDTMLALTVAQ
AHHALSRPIDPVQHAVAFNPTYDQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVEDASIEP
FVFDEQYNTFHKYGYAADPSASAGNNYVGDLDALRENDSISVYSIPQHEQKKRKIEKKKE
MEEDKDPEEVVDKVELDNPASDTWLMKNRKSPWAGKKEGQQTELTEEQKKYAEEYAKKKG
EERERGGEKGEIVPDKSTFHGKEEKDYQGRSWIAPPKDAKATNDHCYIPKRLVHTWSGHT
KGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIWFCNDGTKFL
TAGYDKNIKYWDTETGQVISSFSTGKIPYVVRLNPDDDKQNILLAGMSDKKIVQWDMNTA
QITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIS
LHPSTNYLAAQSLDNQILIYGTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG
EGKCWFWDWKTCRVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggatcttctccgcacctacactgaccaaaacgacgtcgaactcgacgacccagaggac
cataaccaaaaccctaatcccaacacgccgtcaccggacgcctccccgcctcgccttctc
cccggcaagtccgccgctcccaaggttgacgacaccatgctagccctgacggtggcgcag
gcccaccatgccctttcccggcccatcgaccccgtccagcacgcggtcgccttcaacccc
acctacgaccagctctgggcccccatctacggccccgcccacccctacgccaaggacggc
atcgcccagggcatgcgcaaccacaagctcggcttcgtcgaggacgcatccatcgaaccc
ttcgtcttcgacgagcaatacaacactttccacaagtacggctacgctgccgacccctcc
gcctctgccggaaacaactacgtcggagatctagacgctttgcgcgaaaacgactccatc
tcagtctacagcataccgcagcacgagcagaaaaagaggaagatagagaagaagaaggaa
atggaggaggataaggatcccgaagaagtcgtcgacaaggtggagcttgataatcctgcg
agcgacacctggttgatgaagaaccggaagagtccttgggcaggcaagaaggaaggtcaa
caaaccgaattgacggaggagcagaagaagtacgccgaggaatacgcgaagaagaaaggc
gaagaaagagagagaggcggcgagaagggcgagattgttccagataagagcacgttccat
ggtaaggaggagaaggattatcagggtaggtcttggatcgcgccgcccaaggacgccaag
gccacgaacgaccattgttatatacccaagaggttggtgcacacttggagcggccacacg
aagggcgtgtccgcaatccggttcttcccgaaacacgggcatttgattttgtcagcgggg
atggacacgaaggtaaagatttgggatgtgttcaattctggcaaatgtatgaggacatac
atgggccactccaaggcggttcgggacatttggttttgcaacgacggcaccaagtttttg
actgccgggtatgataagaatatcaagtactgggatacagagaccgggcaagtgatatca
agtttcagtaccggaaagattccgtacgttgtcaggcttaatccggacgatgataaacag
aacatcctgctggcggggatgagcgataagaagattgttcagtgggatatgaacacggca
cagattacgcaagagtatgatcagcatttaggagccgtgaataccattacttttgttgat
aataacaggaggtttgttacttcaagcgatgacaagtcgcttcgtgtatgggaattcggg
attcctgtggtcataaagtatattagtgagccgcatatgcactctatgccatcaatttcg
ctccaccctagtacgaattatcttgccgcgcagagtttggataatcagattcttatatat
ggcacgagagagaggtttcagctcaataagaagaagaggtttgccgggcacattgttgcc
gggtatgcttgccaggtcaatttctcacctgatggacgattcgttatgtctggagatggt
gagggtaaatgctggttttgggattggaagacttgcagagtcttcagaactcttaaatgc
catgagggagtatgcattgggtgtgagtggcatccattagaacaaagcaaggttgcaaca
tgcggctgggatggattgattaagtactgggactag
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