Carya illinoinensis (pecan): 122313398
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Entry
122313398 CDS
T08745
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122313398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122313398
03019 Messenger RNA biogenesis [BR:
cill03019
]
122313398
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122313398
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
122313398
U7-dependent histone pre-mRNA processing factors
122313398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
CCD_aECM
Motif
Other DBs
NCBI-GeneID:
122313398
NCBI-ProteinID:
XP_042984291
LinkDB
All DBs
Position
6:complement(34054796..34060777)
Genome browser
AA seq
695 aa
AA seq
DB search
MASAGAQQSLKRRDSSVTREDDQLIITPLGAGNEVGRSCVYMSYKGKTVLFDCGIHPAYS
GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFRGRVFMTYPTKAIYKLLLT
DYVKVSKVSVEDMLYNEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVD
IAGVRVLYTGDYSREEDRHLRAAETPQFSPDVCIIESTYGVQQHQPRNVREKRFTDVIHS
TISEGGRVLIPVFALGRAQELLLILDEYWSNHPELQNIPIYYASPLAKRCLTVYETYIHS
MNDRIRSQHAAKSNPFIFKYISPIKSIENFKDVGPSVVMASPGGLQSGLSRQLFDMWCSD
RKNACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADSAQTSAFLE
ELLPNNIILVHGEANEMGRLKQKLISQFADRNIKIFNPKNCQSIEMYFNSLKMAKTIGRL
GEKTPEVGETVCGLLVKKGFTYQIMAPDDLHIFSQLSTANITQRITIPYAGAFSVLNHRL
KQIFESVESSTDEESGIPILRVHDRVTVKQDSEKHISLHWASDPVSDMVSDSIVALVLNI
NREIPKVVVESEAIKTEEENEKKVEKVTYALLVSLFGDVKSGENGKLVISVDGNVAELDK
QTGDVESENEGLKERVRTAFQRIQSAVKPIPLSAS
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcttcagcaggggcacaacaatctctcaagagacgtgattcatctgtgactagagaa
gacgaccaacttattataactcctttaggtgctggtaatgaagtgggtcggtcttgtgtg
tacatgtcctacaaaggaaaaaccgtactgtttgattgtggaattcatcctgcttattcg
ggcatggctgctttgccgtacttcgatgagatagatccttcaacaattgatgtccttctc
atcactcactttcacttggatcatgctgcatccctaccatattttttggaaaagaccacc
ttcagaggtcgagttttcatgacttatccaacaaaggcaatctacaagctgcttttgact
gattatgttaaagttagcaaagtttcggttgaagatatgttgtacaatgaacaggacatc
aatcgctccatggataaaattgaggttatcgatttccatcaaacagtagaagtgaatggc
attagattttggtgctatactgctggtcatgtcttgggtgctgctatgtttatggttgat
attgccggtgttcgagtactctacactggagactattcacgtgaagaagacagacatctt
cgagctgctgagaccccacagttctctcctgatgtatgcataattgaatccacttatggt
gtccaacaacatcaacctcggaacgtcagagagaagcgcttcactgatgttattcattca
actatttctgaaggaggtcgtgttcttattccagtttttgcccttggccgtgcccaggag
ctgcttttgattcttgatgagtactggtcaaaccatcctgagcttcaaaacattcccata
tattatgcttctcctcttgcaaaaaggtgtttgactgtctatgagacatacatccattca
atgaatgacaggatacgcagccaacatgcagcaaagtcaaacccctttatattcaagtac
atatcacccataaagagcattgagaatttcaaagatgttggcccatcggtggtgatggca
agtcctggtgggcttcaaagtgggttgtcacgacaactatttgacatgtggtgctctgat
aggaaaaatgcttgtgttatacctgggtatgtggttgaagggacactcgctaagaccatt
attaatgaacccaaggaggttacactcatgaatggactcaccgctcctctcaacatgcag
gtccattacatatcattctctgcccatgcagactctgctcagacaagtgcattcttggaa
gagctcttgcctaataacataatccttgttcatggggaagctaatgagatggggaggctc
aaacagaaactcataagccagtttgctgatcgtaacatcaaaatcttcaatccaaagaac
tgtcagtctattgaaatgtacttcaactctctgaaaatggcaaaaactattggcaggctt
ggtgaaaagacaccagaagttggggaaactgtctgtggtttactggtcaagaaaggtttt
acttatcagataatggcacctgatgatctccacattttctcccagctatcgactgcaaac
attactcagagaattaccatcccgtatgctggtgccttcagtgtattaaatcaccggctc
aagcagatatttgagagtgtggagtcttcaaccgatgaggagtctggaatcccaatactg
cgagtgcatgatcgggtgacagttaagcaggattctgagaaacacatttcattgcattgg
gcatcagatcctgtgagtgacatggtttcagactccattgtggctctggttttaaacatc
aaccgggagatccccaaggtagttgtagaatcagaggcaataaaaactgaggaagagaat
gaaaagaaggtggaaaaggttacttatgctctccttgtatctctttttggagacgtgaag
tccggagaaaatgggaagctggtgattagcgtggatgggaatgtggcagagcttgacaaa
cagactggggacgttgagagtgaaaacgaaggtttaaaagaaagagtaaggacggctttc
cagcgaattcaaagtgccgtgaagccaatccctctatctgcgtcttag
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