Carya illinoinensis (pecan): 122313911
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Entry
122313911 CDS
T08745
Name
(RefSeq) RNA polymerase sigma factor sigA-like
KO
K03086
RNA polymerase primary sigma factor
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122313911
Transcription machinery [BR:
cill03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
122313911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Motif
Other DBs
NCBI-GeneID:
122313911
NCBI-ProteinID:
XP_042985147
LinkDB
All DBs
Position
6:7434675..7440493
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AA seq
509 aa
AA seq
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MMATTAVIGLSAGKRLLSSSYHYSDLTEKLPFVNDNALAPYQLTSTKKVISSKKSSNFSH
SFPSASRQAQSIKAVKEDVDIISSPSTAEPWFQRPNNLEEESFDPDCSVEAHLLLQKSML
EKQWNLSFEQKVLTDSARGKNHRKIPLTCSGVSARQRRMKARKKVLNKTAYMVQPYTGKQ
LRSLVSPELLQNHSRGYVNGVASEELLTHADVVRLSKKIGAGLSIEEHKLRLKERLGCEP
SDDQLATSLRIPRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYENMGAEMADLVQGGL
IGLLRGIEKFDSSKGCRISTYVYWWIRQGVSRTLVENSRTLRLPAHMHERLGLIRNAKVR
LEEKGITPSIDRIAECLKMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
RLENNPWHGVDELALKDEVNKLINMTLGERERDIIRLYHGLDNECLTWEDISKRIGLSRE
RVRQVGLVALEKLKHAARKSKMEAMLVKH
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgatggccacaactgcagtgattgggcttagtgcagggaagaggctcttgagttcctcc
taccattactcagatctcacagaaaagctcccatttgtcaatgataatgcactagcaccg
tatcaactcacttcaaccaagaaagtgataagttccaaaaagtcatctaattttagccac
agttttccatcggctagtcgacaagcacagtctatcaaggctgtcaaagaagatgtagat
attatctcttctccttcaactgcagagccttggtttcagagacccaacaaccttgaagag
gaaagttttgatcctgattgttcggtggaggcacatcttttgctgcaaaagtctatgctg
gaaaagcaatggaatctttcttttgagcagaaggtactaactgattcagcaagaggaaaa
aatcacaggaagatacctctcacttgttctggagtatctgctcggcaaaggagaatgaaa
gctaggaagaaagttctgaacaaaactgcttatatggttcaaccctatactggtaagcag
ttgagatcattggtcagtccagagctgcttcagaatcattcaaggggttatgtcaacggt
gtagcaagtgaagagttgcttactcatgcagacgtggtacgcctgtcaaagaaaattggt
gctggtctttccatagaggagcacaaattgagattgaaggagagactaggttgtgagcca
tctgacgaccaacttgcaacttcattgaggattcctcgagccgaattacagtcaaaactg
attgagtgttctttagcaagagagaagctggcaatgagtaatgttcgtctggtcatgtct
attgctcaaagatatgaaaacatgggtgctgaaatggctgaccttgttcagggtgggtta
attggactactgcgcggaattgagaaatttgactcttcaaaagggtgcagaatttcaaca
tatgtttattggtggatacgccaaggtgtttcaagaacattggttgaaaattccaggact
ttgagattacctgctcatatgcatgaaagattaggtttaatccggaatgcaaaagttaga
ctggaagagaaaggaataactccatcaattgatagaattgcagaatgcctgaagatgtca
aaaaagaaagtcaagaatgctacggaggcaatcagtaaggtcttctctcttgatagggaa
gcatttccctctctgaatggtcttccgggagaaacacatcatagttacattgcagataat
cgccttgagaacaacccatggcatggagtggatgagttggcgctgaaggatgaagtaaac
aagctcatcaatatgacacttggggaacgggagagagatatcatacgactttaccatggt
ctggataatgaatgtcttacatgggaggatataagtaaacgcataggtttgtccagagaa
agagttaggcaagtcggactcgttgcacttgaaaaactaaagcatgctgccaggaagagt
aagatggaggctatgctggtgaaacattag
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