Carya illinoinensis (pecan): 122314122
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Entry
122314122 CDS
T08745
Name
(RefSeq) RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
KO
K03093
RNA polymerase sigma-I factor
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122314122
Transcription machinery [BR:
cill03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
122314122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r4
Sigma70_r2
GerE
Put_DNA-bind_N
Motif
Other DBs
NCBI-GeneID:
122314122
NCBI-ProteinID:
XP_042985465
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Position
6:1317283..1321895
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AA seq
520 aa
AA seq
DB search
MGVVTVSSSVSRTPVGLGTKCSAQRSTLKRPLIVAFKADKSNTTGLVTSQEQIPLPIETG
KDHQKRLGKANKKLRRVKAVLTDEASPCALEVDYNEAAAKLENLYKLTPAADASNEENVD
GMVRKTRGRRRKRKITEVDEKLAEKKLASDNVIKNQTDKVKRLSLDKRIALKKNKQDEVV
APKRKIKDSKDESAKIEKLVREYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKA
LLQVKENLQKDLGKEPTEGELAEATDINAVQIRKLIEVGRAARSKLIKHNLRLILFVINK
YFQDFSNGPKFQDLCQAGVKGLITAVDRFEPKRKFRLSTYSLFWIRHAIIRSMTLSSFTR
VSFGLESVRVEIQRAKLELLFELHRLPTEEEIIKKVGISPERYREVMRASKPVVSLHLRH
PITQEEYINGITDVDGCGGDNWRQHALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRT
LGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLQQHLA
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgggagttgtgactgtttctagctcagtttcacgaactccggttggattgggcacgaaa
tgctcagctcaaaggtctacattgaaaagacccttgattgtagcattcaaagcagataag
tccaataccactggattggttacatcccaggagcaaatccctctgcccatagaaacaggt
aaggatcaccaaaagagactaggaaaagctaacaaaaaattgagaagagtgaaagctgtg
ctcacagatgaagcttctccgtgtgccttggaagtggattacaatgaagccgccgccaag
ctcgaaaatttatacaagctcactccagcagctgatgcttctaatgaggaaaacgtagat
ggcatggtgaggaaaacacggggaaggaggagaaagagaaagattactgaagttgatgaa
aagctggcggagaagaaattagccagtgataatgtgatcaagaaccaaacagataaggtt
aaaagattgagtcttgataagaggattgcattgaaaaagaataagcaagacgaagtggtt
gcgccaaaacgaaagataaaagatagcaaggatgaaagtgcgaagattgaaaagctagtg
agggagtactcggcttcaactgatttggttagcttggactggaaaaagatgaagatacct
ccagttcttccttcttcagagcatgcttggttgttcaagctgatgcaacccatgaaggca
ctccttcaagtgaaagagaacttgcaaaaagatttggggaaagaaccaacagaaggtgaa
ttagctgaagcgacggatataaacgcagttcaaatacgaaaactcatagaggttggccga
gcggcaagaagtaagctcattaagcacaatctgcggctcattttgtttgtaatcaacaag
tattttcaagatttctcgaatggcccaaaattccaagacctttgtcaggccggagtgaaa
ggacttattacagctgttgatcgttttgaaccaaaaaggaaattccggctctccacatat
agtcttttttggatcaggcatgccattatacgctccatgacactctccagctttacacgt
gtttcgtttggacttgaatcggttagagttgaaattcagcgagccaaacttgagttgttg
tttgagcttcatagattaccaacagaggaagagataataaaaaaagttgggatctcccct
gagaggtatcgtgaagttatgagagcctcgaaacctgttgtttctctccatttaaggcat
ccaatcacacaagaagagtacattaatgggatcactgatgttgatggttgtggaggtgat
aactggaggcaacatgctcttctcaggcttgcccttgacgatgtgcttgattctctgaag
ccgaaggagagcttggtaataagacaaagattcggacttgatggtaaaggagatagaaca
ttgggagagattgcgggaaacttaaatatttcgagagaaatggttcggaagcatgaagtt
aaggctctcatgaagctcaagcacccagctcgagtggattatcttcaacaacatttagca
taa
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