Carya illinoinensis (pecan): 122314832
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Entry
122314832 CDS
T08745
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122314832
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122314832
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122314832
Spliceosome [BR:
cill03041
]
Complex A
U2 snRNP components
U2 related factors
122314832
Complex B
122314832
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
Motif
Other DBs
NCBI-GeneID:
122314832
NCBI-ProteinID:
XP_042986380
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All DBs
Position
7:complement(33068129..33073812)
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AA seq
1128 aa
AA seq
DB search
MDEGKHKSRTEDSERSRDRERDKARNGERPRNKKKGDSRRSEKESSDSDDKYDREREKHR
TRTRDDERERAREKKREREREREKEKRERAKEKEREREREREKREREREGREREREREKD
RERREREREKEKEREERRMQDREKRRAADSDDGNDDDEVREHDRKRRRRDDDDHRERDRE
WSSNRPRKHRDDNEESPRRNSGGDRSDMMEKKLTREEELEDEQRRLDDEIEKRRRRVQEW
QELRRAKEEAEREKGGEANADEPMSSKTWTLEGESDDEEVPGELETDMDVDEDARPTNEQ
AEASVLVDLGNETDAPTLLNGGDVDAEDDEIDPLDAFMNSMVMPEVEKLKSDLAPSTIDD
KNVDLKNKDKKHEGSNSQPPRKGKKYSMGRIMQGEDSESDYDNPENDEERLDEEDDDEFM
KRVKKTKVEKLSLVDHSKIEYKPFRKNFYIEAKEISKMTFEEVAAYRKQLELKLHGKDVP
KPVKTWYQTGLTSKILETIKKLNYEKPMTIQAQALPIIMSGRDCIGVAKTGSGKTVAFVL
PMLRHIKDQPPVEAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQ
ISDLKRGTEIVVCTPGRMIDILCTSAGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ
NIRPDRQTVLFSATFPRQVEVLARKVLSKPVEIQVGGRSVVNKDITQLVEVRPENERFFR
LLEILGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTIFDFKSN
VCNLLIATSIAARGLDVKELELVINFDVTNHYEDYVHRVGRTGRAGRKGSAITFISEEDA
RYAPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEMRR
AAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQQAALAQIIAAASKVSTPMTMPGSAA
QLLPNGGLPITLPGVGLTIPGTAAVVTGTGLPAIANDTAGAARAAAIAAALNLQQNLAKI
QADAMSEHYEAELEINDFPQNARWKVTHKETLGPISDWTGAAITTRGQYFPTGRVPGPGE
RKLYLFIEGPTEQSVKRAKSELKRVLEDITNQALQLPGGAQPGRYQVL
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atggatgaggggaaacataagtctaggacagaggattcggaaaggagtcgagatagagaa
agagataaggcgaggaacggggagagacctaggaacaagaagaaaggcgatagtcggaga
tccgagaaagagagtagtgattctgatgataaatatgatagggagagggagaagcataga
acgcggacacgggatgatgagagggaaagagccagagagaagaagagggaaagagagagg
gagagggagaaagagaagagggagagggcgaaggagaaagaaagagaaagggaaagggag
cgagagaagagggaacgtgagagagaggggagggagagggagagggagagggagaaggat
agagaaagaagggagcgtgaaagagagaaggagaaggaaagagaggaaaggagaatgcaa
gatagggagaagcgacgggcagctgatagcgatgatggcaatgatgacgatgaggttagg
gagcatgataggaagcggcgtaggagagatgacgatgatcacagggagagagatcgtgaa
tggagcagcaataggcctcgcaagcacagggatgacaatgaagagagcccaagaagaaac
agtggcggtgatcgctcagatatgatggagaaaaagctgactcgggaagaggagttggag
gatgagcagcggagattagatgacgaaattgagaagcggcggaggagagtgcaggagtgg
caagagttgaggagagcaaaggaagaagctgagagagaaaaaggaggggaagcaaatgct
gatgaacctatgtctagcaagacctggactcttgaaggggaatctgacgatgaagaagta
ccgggagaattggagactgacatggacgtggatgaagatgccagacccacaaacgagcaa
gctgaagcatcagtgctggtcgatttgggcaatgaaaccgatgcacccactttgctgaat
gggggggatgttgatgctgaggatgatgaaattgatccattggatgccttcatgaattct
atggtgatgcctgaagttgagaagctaaaaagtgatctggctccctcaactattgatgat
aagaatgtggacttgaagaacaaagataagaagcacgaaggaagcaacagtcaaccgcca
cggaagggtaaaaaatattctatggggagaataatgcagggcgaggattcggagtcagat
tatgataaccctgagaatgacgaggaacggttagatgaggaagatgacgacgagttcatg
aaaagggtgaagaagacaaaagtggagaagctttctttagttgaccactccaagatagaa
tataaaccgtttcggaaaaatttttacattgaagcaaaagagatctcaaagatgactttt
gaagaggttgctgcctaccggaagcaattggagttgaagttacatggtaaggatgtgccg
aagccggtcaaaacctggtaccaaactggacttacaagtaaaatcttggagacaataaag
aagcttaactatgaaaagccaatgacaattcaagctcaggcactgcctataattatgagt
ggtcgagactgcatcggcgttgccaaaactggctcaggcaaaactgttgcgtttgtgctg
ccaatgttgaggcatataaaggaccagccacccgttgaagctggggatggacctattgga
ctaataatggcacctacaagggagcttgtacagcagatccacagtgacataaagaagttt
gcaaaggtacttggtatcaggtgtgtgcctgtgtatggaggttctggtgttgcccaacaa
attagtgatttgaagcggggcactgagattgttgtctgtactccaggcaggatgattgac
atactttgcaccagtgccgggaaaattacaaatctgcgtagggtcacttatttggtcatg
gatgaagctgatcgaatgtttgacatgggttttgaacctcaaattactcgaattgtgcaa
aatattcgtccagatcgccaaacagtactcttctctgccactttcccgcgccaagttgaa
gttttggcacgtaaagtgttaagtaagcccgtagagatacaagttggtggtagaagtgtt
gtgaacaaggacataacacagttggttgaggtgaggccagaaaatgaaaggttctttaga
ctgttggaaatacttggtgaatggtatgagaaaggaaaaattttgatatttgtccactca
caggagaagtgtgatgctttgttcagggatctcctcaagcatggttatccttgcctctca
ttacatggggctaaggatcagacagatcgtgagtcaaccatttttgattttaaaagcaat
gtctgcaatttgctgattgcaacaagtattgctgccagggggttagacgtgaaggagctt
gaattggtgatcaactttgacgttacaaaccactatgaagactatgtccaccgtgttggt
cgtacaggccgagctggtcgaaaaggctctgccattacatttatctcagaggaagatgca
agatatgccccagatcttgtaaaggcattggaactctctgagcaagttgttcctgatgac
ctgaaagctcttgctgatagttttatggcaaaagtgaatcagggacttgagcaagcccat
gggactggttatggtggaagtggttttaaatttaatgaagaggaagatgaaatgagaaga
gcagcaaagaaagcacaggccaaagaatatggtttcgaggaggataagtcagattccgaa
gatgaagatgaaggtataaggaaggcaggtggtgacatatcacagcaggctgccttagct
cagataattgctgctgcctccaaagtcagtacacccatgacaatgccaggctcagctgct
caactgctgcccaatggtggacttcctattacgctgccaggtgttggtctaacaatacct
ggaacagcagcagttgtgactgggactggcctgcctgctattgccaatgacacggctggg
gcagctcgagcagctgccattgcagctgctcttaacttgcagcaaaatttggcaaagatt
caagctgatgcaatgtctgagcactatgaggcagagctggagataaatgattttccccag
aatgctcgatggaaggttacccacaaggaaactttggggccaatttcagactggactgga
gctgctattaccaccagggggcagtatttcccaacaggtagggtgccaggacctggagaa
cgcaagctttacttgttcattgagggtcctaccgaacagtctgtaaagagagctaaatca
gaattaaagcgcgttttggaggacatcacgaaccaggcattacaactgcctggtggagcc
caaccaggcagataccaagttttataa
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integrated database retrieval system
