Carya illinoinensis (pecan): 122314953
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Entry
122314953 CDS
T08745
Name
(RefSeq) auxin response factor 5 isoform X1
KO
K14486
auxin response factor
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
122314953
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Auxin_resp
B3
AUX_IAA
E6
Motif
Other DBs
NCBI-GeneID:
122314953
NCBI-ProteinID:
XP_042986542
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Position
7:35372184..35380158
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AA seq
940 aa
AA seq
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MMGCVEEKVKAGGLSSGARTSLLEEMKFLKEMQDQSGARKAINSELWHACAGPLVSLPQV
GSLVNYFPQGHSEQVAASTKRTVTSQIPNYPNLPSQLMCQVQNVTLHADKDTDEIYAQMS
LQPVTSEKDVFPVPDFGLKPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYT
MQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDAVLFIRDEKS
QLLVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAADRCPFTIFYNPRACPSEFVIH
LARYRKSVYGTQLSVGMRFGMMFETEESGKRRYMGTIVGISDFDPLRWPGSKWRNLQVEW
DEPGCCDKQNRVSPWEVETPESIFIFPSLTSGLKRPLHSGIFGPETEWGHLVKRPPVQVP
ENGNGNLPYSISNICSEKLINMLLKPQIINHPGNYFPTLQQEYATKVEPLEDVKTMLGTM
NQKSQSISSEGTSPVPPQSCLDQQDVVNSNSSLKAIAPGKLNALPKFDNQTLAGANTERQ
NFEPEISAEELSQVTSTGECNEQKMAAGPMSLQNPVNQPTFFNQSQESIQAHTSLWPMQP
QLESLIYHTEQLDVPQSDSSNLNGFLPSPDLDEWKFYPSCQPLSGMFRSPGPLPVFGLQD
PSTLFPEAVNPPLPSMGQEIWDHQLNNLNSLSQAEQLSSFSQQDPCNVNCTSNSIVLRDM
SDESYNQSGIYSCPNIDVNNGGSAVVDPSVSSTIVDDLCMLKGTDFQNPPDYLIGNFSSG
QDVQSQITSVSLGDSQAFSRKDLPDNSGGTSSSNIDFDEGSLLQHNSWQQVVPPVRTYTK
VQKKGSVGRSIDVTGFKNYDELCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLVGD
DPWEQFVRCVRCIKILSPSEVQKMSEEGMKLLNSAAMQGV
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgatgggttgtgttgaggagaaagtcaaagctggagggttaagtagtggggcacgtaca
agtctgctcgaggagatgaagttcttgaaggaaatgcaggatcagtccggggccaggaag
gctataaactccgagttatggcacgcttgcgccggtccccttgtttcattgccgcaggtg
gggagcctggttaactacttccctcaaggtcatagcgagcaggtagctgcttccactaaa
cggacagttacttcacaaattcccaattatccgaatctcccttctcagctgatgtgccaa
gttcaaaatgtcacattgcatgcagacaaagatacggacgaaatttatgctcaaatgagt
cttcaacctgtgacctctgaaaaagatgtcttcccggtaccagactttgggctgaagccc
agcaaacatccaaatgagtttttctgcaaaacgttaactgcaagtgatacaagcacacat
ggtggcttctcagtaccgcgcagagcagcagagaagctctttcctcctttggattataca
atgcaaccaccaactcaagaacttgttgtccgcgatttgcatgataacacctggacattt
cggcacatataccgtggacaaccgaagcgacatcttctcacaactggatggagtttgttt
gttggtgctaaaaggcttaaagcaggtgatgctgtcctttttatcagggatgaaaagtca
cagctactggttggcgtgaggcgtgccaaccgtcagcaaacaacattaccgtcatctgtt
ctatctgctgatagcatgcacattggtgtccttgctgccgcagctcatgctgcagctgac
cgctgcccattcacaattttctataacccaagggcatgcccttcagaatttgtcattcat
ttagctagataccgcaaatctgtctatgggacacaactgtcagttggcatgaggtttggg
atgatgtttgaaacagaggagtcgggtaagcggaggtatatgggtacaatagttggtatt
agtgactttgatcccctgaggtggcctggttccaagtggagaaatcttcaggtggagtgg
gatgagcctgggtgttgcgataaacagaatagggtcagtccatgggaagtagagactcct
gaaagtattttcattttcccttctttgacttctggtctcaaacgaccattgcactccggt
atttttggaccagaaactgaatggggacatttggttaaaaggccccctgtccaggttcct
gaaaatggaaacgggaatctgccatactcaatatctaatatatgctcagaaaaactgatc
aacatgttactgaaacctcagattattaaccatcctggaaactattttcctactctacaa
caagaatatgctactaaggtagagcccttggaagatgtgaagacaatgctgggcacgatg
aaccaaaagtctcagtccatctcatcagaaggtacatcccctgttccccctcagtcatgc
cttgaccaacaagatgtcgtgaactcaaattcatcattgaaagcaattgcaccaggaaaa
ttgaacgctctaccaaaatttgacaaccaaacactggctggagctaatacagaacggcaa
aattttgagcctgagatttcagcagaggagttaagccaggtgacatccacaggcgagtgc
aatgagcaaaagatggctgcaggacctatgagtcttcaaaaccctgtaaaccagccaaca
ttctttaaccagagccaggaatcgatacaagcacatactagtctgtggcctatgcagccg
caattggaatcattgatctaccatactgaacaacttgatgtaccccaatctgattcttct
aatctaaatggctttcttccatccccagaccttgatgaatggaaattttatccctcatgc
caacctcttagtgggatgtttagatcacctggacctctacctgtgtttggattgcaagac
ccttcaacattgtttcctgaagcagttaatcctcctctaccttcaatgggacaggaaatt
tgggatcatcaacttaataatttaaatagtttatcccaagcggagcagctctcttctttt
tcacaacaagacccatgtaacgttaattgtacgtctaattcaattgttttaagagatatg
tcagatgagagctacaaccaaagtgggatttacagttgccctaacattgatgtaaataat
ggtggaagtgctgtggtagatccttctgtttcaagcaccattgtggatgacctatgcatg
ctaaagggtacagattttcagaatcctcctgattatttgataggcaacttcagttctggt
caagatgttcaatcacagattacctcggtgagcctaggagactcgcaggctttctctcgt
aaggacttacccgacaactcaggaggtacgtcctcgagcaacatagattttgatgagggc
agtcttcttcagcataactcatggcagcaagtagttccgcctgtgcgaacctatacaaag
gtccagaaaaaaggatctgttggaaggtctattgatgtcactggttttaaaaactacgat
gaactgtgttctgcaattgagtgcatgtttggactcgaggggctgctcaatgacccaaga
ggttcagggtggaagctagtatatgtagattacgagaatgatgttctactcgtaggagat
gatccttgggagcaatttgtgcgatgtgtccggtgcatcaaaatcttatcaccttcagag
gttcagaagatgagtgaagagggaatgaagcttctaaacagtgctgcaatgcaaggggtc
taa
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