Carya illinoinensis (pecan): 122315078
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Entry
122315078 CDS
T08745
Name
(RefSeq) ATP-dependent RNA helicase DEAH13 isoform X1
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cill03009
]
122315078
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122315078
Ribosome biogenesis [BR:
cill03009
]
Eukaryotic type
90S particles
Helicases
122315078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHX37_C
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
nSTAND3
ATPase
ResIII
Motif
Other DBs
NCBI-GeneID:
122315078
NCBI-ProteinID:
XP_042986737
LinkDB
All DBs
Position
7:complement(30322374..30337499)
Genome browser
AA seq
1376 aa
AA seq
DB search
MDIWLNGGPGFSAPTVSFTKAVSIFFNASEIQSRLRTLQRLLLSEMELRRESSGQALELN
RGKRSWSLEDPDSNALILPEKKRNKKKGVDKECKRIKMDKNPKLSKAQKRKLKKLEEEKE
RALLLSKSIETLEKYKLPEDAFHLLHSSRDIGHAETMKEKHRRAVHFSKAGLEVPDRDKP
FERKGGDSATGGTELEVDRISSRQDFNKDDSLQPTILRGEALKILSKMDKIPSRKDFKDD
DLFQPMILQRESQNYESVPLDSSQGAVRCIENSGSDKADASQKVDYSRKFNTQVCPAQEP
LTFPTVVHVSRPNEIQNSRKDLPIVMMEQEIMEAINDHSAVIICGETGCGKTTQVPQFLY
EAGFGSSQSSIKRGIIGVTQPRRVAVLATAKRVAFELGFHLGQEVGFQVRYDKRIGESCS
IKFMTDGILLREVQNDFLLKRYSVIILDEAHERSLNTDILIGMLSRIIKIRQDEYEKQQQ
IVRTGQSVSPDDVISPLKLVLMSATLRVEDFISGRRIFNDPPPVIEVPTRQYPVTIHFSK
RTEIFDYIGQAYKKVLAIHKRLPHGGILVFVTGQREVNHLCRKLSKASKELVMKTSREDV
GTDGTGVSQTKSVEDINMKEINDAFDFDGNSIHQNTYRFSSYEEDERDIDENDSDVSYDS
ETESELEFDDDVDGDPSHQTTKEDDRNLLNVLGEDGSLASLKAAFEALAGKPALNSSDGK
HAPLSSPEGCLDQSNPSIGNKKGEKGFCAGTLRVLPLYAKLSAADQLCVFKEVKEGERLV
VVATNVAETSITIPGIKYVVDTGREKVKAYNSSNGMETYQVQWISKASAAQRAGRAGRTG
PGHCYRLYSSAVFSNILPDFSLAEISKMPVDGVVLLMKSMRIDKVQNFPFPTPPKITALV
EAEQCLKALEALHSNGKLTPLGKAMARFPMSPRHSRMLLTVIQTMRMVNCYARANLVLGY
AVAAAAALSLSNPVVLQFEGSDVNKDDLEQDEKSGTQVDVEVIGKQEKLRRKKQKETAKM
FRAKFSNPNSDALTIAYALQCFELSSSPAEFCNDNALHLKTMEEMSNLRRQLLQLIFEKG
LCGTEQDFSWIHGTRDEVEHAWRVSSNNPPLLLNEEELLGQAICAGWADRVAKRIRVASR
LSEGDRKTHAVRYQACMVKETVFLHRWSSVSSSASEFLVYSELLQTKRPYMYGVTSVKPE
WLVKYASSLCTFSSVLTDPKPYYEPQSDQVFCYVIPTFGPHLWELPLHSLPITNDMQRVT
VFAYALLEGKVLPCLGPVRKFMSAPPSSILRPEASGQKRVGNLLNKLKTKSIDSCSMLRE
VWMENPNELHSEILGWFQESFHKHFQVLWSKMHGEILLEPQERFPKRGRVKSKSKK
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atggatatttggcttaacggcgggccaggtttctccgctccaacggtttcgtttacaaaa
gcagtgtcaattttttttaatgcctcagagattcaaagtcgacttcgaactctgcaacgg
ctattgttgagcgagatggagctccgtcgggaaagttcgggacaagcgttggagttgaat
cgtggaaagcgttcgtggagtttggaagatcctgatagcaatgcactaatcttgcctgaa
aagaaaaggaacaaaaagaaaggcgttgataaggaatgcaaaaggattaaaatggataag
aatcccaagctgagcaaagctcagaaaaggaagttgaagaagttagaggaggaaaaggag
agagcacttttgctgtcaaaaagcattgagaccttggagaagtacaagcttccggaggac
gcatttcatcttctgcattcttcacgagatattggtcatgctgaaaccatgaaggaaaaa
cataggagggctgtgcacttttctaaggcaggattagaagttccggatagggacaaacct
tttgaaagaaagggtggtgattctgccactggtggaactgaacttgaggtggacagaatt
tcttcaaggcaggatttcaacaaggatgattcattgcaaccaaccatacttagaggagaa
gccctgaagattctgtctaaaatggacaagattccttcaaggaaggatttcaaggatgat
gatttattccaaccaatgatactgcaaagagaatcccagaattatgaatctgtacctttg
gactcttctcaaggggcagttcggtgcattgaaaacagtggatcagataaggcagatgcg
agccaaaaggttgattacagcaggaaatttaacacacaagtttgtcctgctcaagaacct
ttaactttcccaactgttgtgcatgtatctaggccgaatgagattcagaactctaggaag
gatcttccaatagtcatgatggagcaggagataatggaagctataaatgatcattcagct
gtgatcatatgtggcgagactgggtgtggtaaaactactcaagttcctcagtttctttat
gaagctggctttggttcaagccagtccagtattaaaagaggtattatcggtgttactcaa
ccgcgccgtgttgctgtacttgccactgccaagcgagtggcatttgagcttggtttccat
ctaggtcaagaggttgggtttcaagttaggtatgacaagaggattggagagagttgctca
atcaagttcatgactgatggaattttactacgagaagttcagaatgattttttgctgaag
cgttattctgtcataattcttgatgaagctcacgagagaagcttgaacacagacatactg
attggaatgctttcacgtataattaaaattcgccaggatgaatatgagaagcagcaacaa
attgtgcgtacaggacaaagtgtaagtccagatgatgtgatttctccattgaaacttgtg
ctgatgagtgccaccttgcgagtggaagattttatttctgggagaaggatatttaacgat
cctccacctgttatagaagttccaactagacagtatccggtaaccatacacttctcaaag
agaacagagatctttgattatattggtcaagcgtataaaaaggtcttggcaattcacaag
aggctgccacatgggggtatacttgtctttgtcactggacagagggaagtaaaccacttg
tgtcggaagctatctaaagcttcaaaggagctggttatgaaaacatcaagggaggatgtt
gggactgatggcactggggtctcccaaacaaaatctgttgaagacataaatatgaaggag
attaatgatgcatttgactttgatgggaattcaattcaccagaatacttacaggtttagc
tcttatgaggaagatgagcgtgatatagatgagaatgattcagatgtttcttatgattcg
gaaacagagagtgaactggaatttgatgatgatgttgatggggacccatcgcatcagacc
accaaagaggatgatcgtaatctattaaatgttttaggggaggatgggagccttgcttca
ctaaaagctgcttttgaagctttggctggaaaacctgcattgaactcttctgatggtaaa
catgcccctctttctagtccagaagggtgcttagaccaatccaatccaagcatagggaac
aaaaagggggaaaaaggtttctgcgctggtacattgcgtgttctgcctctttatgccaag
ctgtctgctgccgaccagctttgtgtttttaaagaagtaaaggaaggagagagacttgtg
gttgttgccactaatgtggctgaaacctctataactatcccaggcatcaagtatgttgtt
gataccgggagagaaaaggtgaaggcctacaactcctccaatggcatggaaacataccaa
gtacaatggataagtaaggcatcggctgctcaacgtgcaggaagagctggaagaactggg
ccgggccactgttatcgtctctactcttctgcagtttttagtaatatacttcctgacttt
tctcttgctgaaatatctaaaatgccagttgatggtgttgtccttctcatgaaatccatg
cgaatcgataaggttcaaaactttccatttccaactcctcccaagatcactgcattggtt
gaagcagagcaatgcttgaaggctctagaagctcttcatagcaatggcaaattgacaccc
ttagggaaagccatggctcgatttcccatgagtccacgccactcccggatgctccttacc
gttattcagactatgaggatggtgaattgttatgcccgtgcaaatctagttttgggatat
gcggttgcagcagctgcagctttgagtttgtcaaatcctgttgtcttgcaatttgaagga
agtgatgtgaataaagatgacctagagcaggatgagaaatctggtactcaagttgacgtg
gaagtcattggcaagcaagaaaaattgaggagaaagaaacagaaagaaactgcaaaaatg
ttccgtgcaaagttttcgaaccctaacagcgatgctctgaccatagcatatgcactgcag
tgttttgaactctccagcagcccagcggaattctgtaatgacaatgcattgcacctgaaa
accatggaggaaatgtccaatttacgaagacagctacttcaactgatctttgaaaaaggc
ctttgtggcaccgagcaggatttctcttggattcatggaactcgagatgaagtagaacat
gcttggagagtttcctccaataatcccccacttttgctgaatgaagaagagctcttgggc
caagctatctgtgctggatgggcagatagggttgccaaacgcattagagtagcttcaaga
ctgtctgaaggagacagaaaaacacatgcagtacggtatcaagcttgtatggtaaaagaa
actgtgttcctccatcgttggtcatctgtttctagttcggcctctgagttcttggtttac
agtgaattgctacagacaaaacgaccatacatgtatggtgtgacaagtgtgaaaccagag
tggcttgttaaatatgctagctctttgtgtaccttctcctcagtccttacagatcccaaa
ccttattatgagcctcaatctgaccaagtattctgttatgtcattcctacttttgggcct
catttatgggaacttcccctgcatagtttgccaatcacaaatgatatgcaacgggtgaca
gtttttgcttatgctttgcttgaaggaaaagtgttaccatgcttagggcctgttcgaaag
ttcatgtcagcccctcctagtagcattttgaggccagaggcatcaggtcaaaaaagggtc
ggaaatcttttgaacaagttaaagaccaaatcaatagatagctgctctatgttaagagag
gtctggatggagaaccctaacgagttgcattcagaaattctgggttggtttcaggagagt
ttccacaagcactttcaagttctttggtcaaaaatgcatggtgaaattcttttagaacct
caagaacgcttccccaaaagaggaagagttaaaagcaaaagcaagaagtga
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