Carya illinoinensis (pecan): 122315263
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Entry
122315263 CDS
T08745
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122315263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122315263
03009 Ribosome biogenesis [BR:
cill03009
]
122315263
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122315263
Spliceosome [BR:
cill03041
]
Complex A
U2 snRNP components
U2 related factors
122315263
Complex B
122315263
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
122315263
Ribosome biogenesis [BR:
cill03009
]
Eukaryotic type
90S particles
Helicases
122315263
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
ResIII
ABC_tran
SRP54
T2SSE
FtsK_SpoIIIE
AAA_30
AAA_7
Flavi_DEAD
TsaE
AAA_29
Motif
Other DBs
NCBI-GeneID:
122315263
NCBI-ProteinID:
XP_042987013
LinkDB
All DBs
Position
7:31519892..31525949
Genome browser
AA seq
733 aa
AA seq
DB search
MGTERKRKVSLFDVVDETVVPAKISKSNGGGAAAAAVMNISSNNGGINRWTGRPYSPKYQ
EILEKRTSLPVWHQKEEFLQVLKANQTLILVGETGSGKTTQIPQFVLEAVDIETPDKRRK
MMIGCTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREA
MTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFF
GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDAC
RKILKEIANLGDQVGPVKAVPLYSTLPPAMQQKIFEPAPPPVKEGGPPGRKIVVSTNIAE
TSLTIDGIIYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLY
TEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNY
LGALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPRE
AQKAADEAKARFGHIDGDHLTLLNVYHAYRQNNEDPSWCYENFVNHRALKAADNVRQQLV
RIMARFNLKLCSTDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQMVHLHPSN
CLDHKPEWVIYNEYVLTSRNFIRTVTDICGEWLIDIAPHYFDLTNFPQCEAKRVLERLYN
KREKDKEGSKNRR
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagaggaagaggaaggtgagcttattcgacgtggtggacgagactgtggtg
ccggcgaagatctcaaaatcgaatggcggaggagctgcggctgcggcggtgatgaacatc
agcagcaataatggtgggatcaataggtggacggggaggccgtactcgccgaagtatcaa
gagatattggagaagaggacaagcttgcccgtttggcaccagaaggaggagttcttgcag
gttctcaaggccaaccagactctgatcctcgtcggtgagactggtagtggcaaaaccact
cagattccccaattcgttttggaagccgttgacattgaaactccagataaacgtaggaaa
atgatgattggatgcacccaacctcgtagggtggctgcaatgtcagtttctcgacgtgtt
gctgaagagatggatgtaactattggagaagaggttggttacagtatccgatttgaggac
tgcagtagtgctagaacagttttgaagtatctgacagatggtatgcttttaagagaagca
atgacagatccacttttggaacgctacaaggtcataatccttgatgaggctcatgaaagg
acattggcaactgatgttctatttgggcttttgaaagaagttctaaaaaatagacctgac
ttgaagctagttgtgatgagtgcaactcttgaggctgaaaaatttcagggttatttcttt
ggtgcaccacttatgaaagttcctggaaggcttcatccagtagagatattctacacccag
gaaccagaaagggactacctggaggcggcaattcggacagttgtgcaaattcacatgtgt
gaacctcccggagatatacttgtgttcctcactggtgaggaggagatagaagatgcatgc
cgaaaaatattgaaagagattgcaaatctgggtgaccaggtgggacctgtgaaagcagtg
cctttatattccactcttcccccagctatgcagcagaagatatttgaaccagctccacct
ccagtgaaggagggtggtcctcctggaaggaagattgtggtttccacgaacatcgcagaa
acttctttaaccattgatggtatcatatatgttattgatcctggatttgcaaaacaaaaa
gtttataacccacgagtgcgtgttgagtccttgttggtatctccaatatctaaggctagt
gcgcaccagagatcggggcgtgctggaagaacacagcctgggaaatgctttagactctat
actgagaaaagtttcaataatgatcttcagccacagacctatccagaaatattaagatca
aatctagcaaatacggttcttaccttgaaaaaactggggatagatgatcttgtgcatttt
gattttatggatccccctgctccggagacattgatgcgggcactagaggttctgaattac
ttgggtgcattagatgatgatgggaatttaacaaagctgggggaaatcatgagtgaattt
ccactagatcctcagatgtcaaagatgctcgttgttagccctgaattcaattgttcaaat
gaaattctgtcgatttctgccatgctttcagtacccaattgctttgtccggcctagggag
gctcaaaaagctgctgatgaagcaaaagctaggtttgggcacatcgatggagatcacctt
actctcttgaatgtataccatgcctacaggcaaaacaatgaggatccttcttggtgttat
gagaactttgtcaatcatagggcgttgaaggctgctgataatgttagacaacagctagtg
cgtatcatggccaggtttaacctcaaattgtgcagcactgatttcaacagccgtgactat
tacatcaacataaggaaggctatgctagcaggatactttatgcaggtagctcacctggaa
cgtactgggcactacttgacagtgaaagacaaccaaatggtgcacttgcatccatcaaat
tgcttggatcacaagccagaatgggtaatttacaatgaatatgtccttaccagcaggaac
tttatccgcacggtgacagacatttgcggtgaatggctaattgatatagcaccacactat
tttgatctgacgaacttccctcagtgtgaggccaaacgtgttcttgaaaggctttacaat
aagcgggagaaggacaaggaggggagtaagaacagaagatga
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