Carya illinoinensis (pecan): 122315750
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Entry
122315750 CDS
T08745
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03440
Homologous recombination
cill03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122315750
03450 Non-homologous end-joining
122315750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cill03032
]
122315750
03400 DNA repair and recombination proteins [BR:
cill03400
]
122315750
DNA replication proteins [BR:
cill03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
122315750
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
122315750
BRCA1-C complex
122315750
NHEJ (non-homologous end-joining)
MRX complex
122315750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_21
AAA_15
Rad50_zn_hook
SbcC_Walker_B
OVT1
AAA_29
ABC_tran
AAA_16
SAM_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
122315750
NCBI-ProteinID:
XP_042987812
LinkDB
All DBs
Position
1:complement(33898255..33923911)
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAVLENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLYKDQAHEIKTYKLKLENLQTLKDAAYKLRESIAQDQERTESLKT
QMQELEGSIQNVDARIHHTEATLKDLRKLQDQISTKTAERSTLFKEQQKQYAALAEENED
TDEELKEWKNKFEERIALLESKISKLEREMNDTETKSSFLKQTINEYIWEISKLQTEAEA
HMSLKNERDSTIQKLFARHNLGSLPDTPFSNEGALSLINRIKSRLTNLEKDLEDKKKSNE
KELKTAWDHYMDANDRWKNIDAQKQAKLEIKSGILKRIEEKENERDSFELRISNVNLSHI
DEKEKNLRIEVERKTNQLAEKDFESNIRQKQSELYSIEQKIKAINREKDIMAADSEDRVK
LSLKKAELDNHKKKHKKIIDEYKDRIRGVLKGRFPPEKDLKKEITQALRAVGIEFDDLNT
KSREAEKEVNMLQIKIQEVNSNLSKHHKDMESRKRFIESKLQSLDRQYLSIDAYLKLLES
AKEKKDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQRVKAAS
SAEHMKVLAVETSNADSFFQQLDKLRMVYEEYVKIGEETIPNAEKDLHELTEELDQKSQA
LDDVLGVLAQVKTDKDSIEVLVQPIDTADRLFQEIQTWLKQVDDLEYKLDFRGQGVRTME
EIQSELNTLQSTKDGLHNELEKLRDEQRYMENDLSNIQIRWHTVREEKVKAANTLRDVKK
AEEELERLTEEKSQVDLDDKHLAEALGPLSKGRDKLLSDHNELKAKLHHEYEEQAEQKRN
YQQEVESVLKITSRIKEYYDLKKGDRLTEVQEKQSLSESQLQSCDVRKQEILAELNKSKD
LMRNQDQLRRNIEDNLNYRKTKAEVDELTHEIESLEEKILKIGGVSTIEAELRKLSQERE
RLLSELNRCHGTMSVYQSNISKNKIDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYRVLMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALL
RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVTKDDHQHSIIEAQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgtcgataaaatgctaatcaaaggtatccggagcttcgatccggagaacaag
aacgtcatcaccttcttcaagcccctaaccctaatcgtcggccccaacggagctggaaaa
accaccattatagagtgcttgaagctttcgtgcaccggagagttgcctcccaatgcaagg
tccgggcatagtttcattcatgaccccaaggttgcaggggaaacagagacaaaagggcaa
attaagcttcgtttcaagacagcagcggggaaggatgtggtgtgcataaggtcgtttcag
ctgacacagaaggcatcgaagatggaatataaggcaattgagagcgtgcttcaaacaatt
aaccctcacactggagagaaagtttgccttagctatagatgtgctgatatggatagagag
atcccggctttaatgggtgtttcaaaggctgttctggaaaacgtgatatttgtacaccaa
gatgaagctaattggccattgcaagatccttccacactaaaaaagaagtttgacgatatc
ttctctgctacccgatatacaaaggcattggaggtcataaaaaaactttacaaggatcaa
gctcatgaaataaagacctacaagttgaaattggagaatcttcaaactttgaaagatgct
gcatataagcttcgggaaagcattgctcaagatcaagagagaacagaatctctgaaaact
caaatgcaggaattggagggtagcatccaaaatgtggatgctagaattcatcatactgaa
gcaacactgaaagatttgcggaaactacaggaccagatatcaaccaagactgctgaaaga
agtactttgtttaaggagcagcagaaacaatatgctgctcttgctgaggagaatgaagac
actgatgaagagttgaaggaatggaaaaataagtttgaagaaaggatcgcgcttttggaa
tctaaaataagcaagttggagagggaaatgaatgacacagagactaaaagttcttttctt
aagcagacaattaatgaatatatctgggagattagcaagcttcaaactgaagctgaagct
catatgtccttgaagaacgaacgggattccaccattcaaaaactttttgcaaggcataat
ctagggtctcttccagatacccctttcagcaatgaaggtgctttaagcctcataaataga
ataaaatctaggttgacaaatcttgagaaggatctggaggataaaaagaaatcaaatgaa
aaggaacttaagacagcctgggaccattacatggatgcaaatgaccgttggaaaaatatt
gatgctcaaaaacaggcgaaattggagatcaagagcggcattttgaaacgaattgaagag
aaggaaaatgagcgggattcatttgagctccgtatttctaatgtcaatctttctcacatt
gatgaaaaagagaagaacttgcgcattgaggttgagagaaaaacaaatcagcttgctgaa
aaagattttgaatcaaacatacgtcaaaagcagagtgaactatatagcatagagcaaaag
ataaaggctattaatagagagaaagacatcatggctgctgattccgaggacagagtgaaa
ctgtctcttaagaaggcagagttggataatcacaagaagaaacacaaaaagataattgat
gagtacaaggacagaattagaggagttttgaaagggcggtttccacctgaaaaggatttg
aaaaaggaaataactcaagccctaagggctgttggaattgagtttgatgacttgaataca
aaatcccgtgaagctgagaaggaggtgaatatgttgcagattaaaatacaagaagtcaat
agtaatctttccaaacatcacaaggatatggagtcaaggaagagatttattgaatcaaaa
cttcagtccttagaccggcaatatcttagtattgatgcttatctcaaattacttgagtcg
gccaaggaaaaaaaggatgtccagaaaagcaaatacaacattgcagatggtatgcggcaa
atgtttgatccttttgaaagggttgcccgtgctcatcatgtttgcccttgctgtgagcgc
cctttctctgcggaagaggaagatgaatttgttaaaaagcaaagagtgaaggcagcaagt
tctgctgagcacatgaaggtcttggctgtggagacctcaaatgctgactcttttttccag
cagttggacaagcttcgtatggtttatgaagaatatgttaaaattggagaggaaactatt
cctaatgctgagaaagatttgcatgaactgactgaagagctggatcaaaagtctcaggca
ctcgatgatgtgttaggtgttttggctcaagtaaagactgataaggactcaattgaggtc
ttggtgcaacccattgacactgctgacaggctcttccaagaaattcaaacttggctaaag
caagttgatgatttggagtataagcttgattttcgaggacaaggtgtgagaaccatggaa
gaaattcagtcagagctgaatacattgcaaagcacaaaggatggtttgcacaatgaactg
gagaagttaagggatgagcagaggtacatggaaaatgatttatccaacatccaaatacgg
tggcacactgtaagggaggagaaagtcaaagcagctaatacattacgtgatgttaaaaag
gcagaggaagagttagaacgtttaactgaggaaaaaagtcaagttgatctcgatgataag
catttggcggaggcccttggccctctatcgaaggggagagataaattactgagtgaccac
aatgaattgaaagctaagcttcatcatgaatatgaggagcaggcagaacaaaaaagaaat
taccagcaggaagtggagagtgtacttaaaattacttcaagaattaaagagtattatgat
ctaaagaaaggagatagattgacagaggtgcaagaaaagcaatctctatcagaatctcaa
cttcaaagttgtgacgttaggaagcaggaaattttagctgaactaaacaaaagtaaagac
ttgatgaggaatcaggatcaactaagacgaaatattgaggacaacttgaattacaggaaa
acaaaggctgaggtagatgagcttactcatgaaattgaatcactggaagaaaaaatacta
aaaattggtggagtttcaaccattgaagctgagcttagaaagctctctcaggaaagagaa
agacttctttcagagttgaacaggtgtcatggaacaatgtctgtttaccaaagcaatatt
tcgaaaaacaaaattgatcttaaacaggcacagtacaaggacattgacaaacggtacttc
gatcagctaatccagcttaagacaactgagatggcaaacaaggacttagacagatattac
aatgcccttgacaaagctcttatgcgcttccacacaatgaaaatggaggaaataaataaa
attattagagagttgtggcagcaaacatacagaggacaagatatagattacattagtatc
cattcagattctgaaggtgctgggactcgttcctacagctacagggttctcatgcagact
ggtgatgcagagttagaaatgaggggtaggtgtagtgctggacagaaggtccttgcttcc
ttgataatacgattggctttagctgagactttctgcctcaactgtggtatactagcacta
gatgaaccaaccacaaacttggatggcccaaatgcagagagtcttgctgctgcccttctg
agaattatggaggacagaaagggccaggaaaattttcagctgatagtgattactcatgat
gagcgttttgctcaactaattggtcaacggcagcatgcagaaaaatattatcgggtcaca
aaggatgatcatcagcatagtataattgaagcacaggagatatttgactga
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