Carya illinoinensis (pecan): 122315822
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Entry
122315822 CDS
T08745
Name
(RefSeq) vacuolar protein sorting-associated protein 35A-like
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
122315822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cill04131
]
122315822
Membrane trafficking [BR:
cill04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
122315822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Urb2
STAT_int
Motif
Other DBs
NCBI-GeneID:
122315822
NCBI-ProteinID:
XP_042987961
LinkDB
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Position
7:complement(10151628..10163901)
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AA seq
790 aa
AA seq
DB search
MISDGVEDEEKWLTAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSRLSPHKY
YELYMRSFDELRKLEMFFKEEARRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKE
APAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVIDAVEFVL
QNFTEMNKLWVRMQHQGPAREKEKREKERSELRDLVGKNLHVLSQIEGVDLDMYKDTVLP
RVLEQVVNCKDELAQHYLMDCIIQVFPDEYHLQTLDVLLSACPQLQPSVDIKTVLSQLME
RLSNYAASSAEVLPEFLQVEAFSKLSNAIGKVIEAHVDMPTIGVVTLYSSLLTFTLHVHP
DRLDYADLVLGACVKKLSGKGKIEDSKATKQIVALLSAPLEKYNDIVTALKLSNYPRVME
YLDTETNKVMATVIIQSIMKNKTCIETEDKVEALFELVKGLIKDLEGNHQDEIDEDDFKE
EQNSFARLIQMLYNEDPEEMFKIICTVRKHILTGGPKRLPFTIPSLIFSCLKLVRQLQGQ
DENPFGNETSTTPKKIFQLLNQTIEALSSVPAPELSLRLYLQCAEAANDCDLEPVAYEFF
TQAYILYEEEISDSKAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKSDQC
RAVYACSHLFWVDDQENMKDGERVLLCLKRALRIANAAQQMANAARGNTGSVTLFVEILN
KYLYFFEKGNPQITVSTIQGLIELITTEMQSDTTTPDPAADAFFASTLRYIQFQKQKGGA
ISEKYEPIKV
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgatctccgacggagtcgaagacgaagagaaatggcttaccgctgggatcgccggcctc
cagcagaatgccttctatatgcaccgtgctctggattcgaacaatcttcgagacgccttg
aaatactctgctcagatgctctcagagcttcggacttcgaggctttcccctcacaaatac
tacgaactctacatgcgttcattcgatgagttgaggaagctggagatgttcttcaaggaa
gaggctcgccggggctgctctattattgatctgtacgagcttgtgcagcacgctggtaac
attttgcccagattgtatctactctgcacggtaggatctgtatacatcaagtctaaggaa
gctcctgctaaggatgttctcaaagatctcgtggagatgtgtcgaggcattcaacatcct
gtacgcgggctatttttacggagttacctttctcaagtcagtcgggataaattacctgat
attggttccgagtacgaaggagatgctgacaccgtcatagatgctgtggaatttgtactc
caaaacttcacagaaatgaataaactttgggtgcggatgcaacatcagggacctgcccgg
gaaaaggagaagcgggagaaagaaaggagcgagctgcgtgatcttgttgggaagaacctg
catgttctcagtcagattgagggcgttgaccttgatatgtacaaagatactgttcttccc
agagtcttggagcaggttgtaaattgcaaagatgagcttgcccaacactacttgatggat
tgcataatacaagtgtttcctgatgagtaccacttgcaaactcttgatgtattactgagt
gcttgccctcagcttcagccatctgttgacatcaaaacggtactatcccagttaatggaa
aggctttcaaactatgctgcatcaagtgctgaagtgttacctgagttcttgcaagtcgaa
gcattctccaaattgagcaatgccatcgggaaggtgatagaagcacatgttgacatgcct
accattggagttgtaactttatattcttctcttctcacgttcactcttcacgtccaccct
gatcgacttgattatgcagatctagtgttgggagcatgtgttaagaaactctctggcaaa
ggaaagattgaagacagcaaagcaacaaaacagattgtggcacttttaagtgctccgctt
gagaaatataatgatattgttactgccttgaagctttcaaactatccccgtgtcatggaa
tacttggacactgaaacgaacaaagtcatggcaactgttataattcaaagcattatgaaa
aacaaaacgtgtatagaaaccgaggacaaggttgaggcattgtttgaattagtcaaggga
cttatcaaggatttagaggggaaccatcaagatgagattgacgaggatgatttcaaggag
gagcagaattcttttgcacgtctcattcagatgctttacaatgaagatcctgaagaaatg
tttaagataatttgcactgtaaggaagcatatcttgaccggaggaccaaagcgtctaccc
tttactattccttctctcattttctcctgtctcaagttggttaggcagttacaaggccaa
gatgaaaatcctttcgggaatgaaacgtcaaccactccaaagaaaatttttcagcttttg
aatcagacaattgaggctctgtcaagtgttcctgcacctgaactttcattacggctgtat
ctgcaatgtgctgaggctgccaatgactgtgacttagaacctgttgcttatgaatttttc
actcaagcatacattctgtatgaagaagaaatttcagattctaaagcacaggtgactgca
atacatttaataattggaacgcttcagaggatgcatgttttcggtgttgagaacagggat
accttaacacacaaggcaacagggtattctgcaaagcttttaaagaagtctgatcaatgt
agagctgtttatgcatgctcacatctcttctgggttgatgatcaggagaacatgaaagat
ggagaaagagtcctactttgccttaagcgtgcattacgaattgcaaatgctgctcaacaa
atggccaatgcagcacgtggcaacacaggatcggtgacactatttgttgagatactgaac
aagtacctttatttctttgagaaaggaaatcctcagattactgtttccacaatccagggc
ctgattgaattaattaccactgaaatgcaaagtgacactaccacaccagatccagctgca
gatgctttctttgccagcacgctgcggtacatccagttccagaaacagaaaggcggtgca
ataagcgagaaatacgagcccatcaaagtgtga
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